| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 565,055 | Δ21,054 bp | [intD]–ompT | 37 genes [intD], xisD, exoD, renD, insE‑3, insF‑3, renD, emrE, ylcJ, ybcK, ybcL, ybcM, ylcH, ybcN, ninE, ybcO, rusA, ylcG, ybcQ, nmpC, insH‑2, nmpC, essD, rrrD, rzpD, rzoD, borD, ybcV, ybcW, ylcI, nohD, aaaD, tfaD, ybcY, tfaX, appY, ompT |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 565055 | 586108 | 21054 | 145 [0] | [0] 143 | [intD]–ompT | [intD],xisD,exoD,renD,insE‑3,insF‑3,renD,emrE,ylcJ,ybcK,ybcL,ybcM,ylcH,ybcN,ninE,ybcO,rusA,ylcG,ybcQ,nmpC,insH‑2,nmpC,essD,rrrD,rzpD,rzoD,borD,ybcV,ybcW,ylcI,nohD,aaaD,tfaD,ybcY,tfaX,appY,ompT |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 565054 | 0 (0.000) | 134 (1.000) | 65/88 | 0.0 | 100% | coding (925/1164 nt) | intD | DLP12 prophage; putative integrase |
| ? | NC_000913 | 586109 = | 0 (0.000) | intergenic (‑476/+38) | ompT/envY | outer membrane protease VII (outer membrane protein 3b)/DNA‑binding transcriptional activator EnvY | |||||
Only 100 of 143 total aligned reads displayed.
CTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTTCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACATCA > NC_000913/586060‑586157 | tcagccagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcc < 2:1700539‑M2/1‑1 (MQ=255) cagccagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCt > 2:3777388‑M2/49‑50 (MQ=255) agccagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCt < 1:5328584‑M2/2‑1 (MQ=255) agccagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCt < 2:3883422‑M2/2‑1 (MQ=255) agccagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTc < 1:1134401‑M2/3‑1 (MQ=255) agccagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTc < 2:2803170‑M2/3‑1 (MQ=255) agccagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTc < 2:2917758‑M2/3‑1 (MQ=255) agccagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTc < 2:1717425‑M2/3‑1 (MQ=255) agccagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTc < 1:3838666‑M2/3‑1 (MQ=255) gccagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCa < 1:4745887‑M2/4‑1 (MQ=255) gccagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCa > 1:1558354‑M2/47‑50 (MQ=255) gccagcttgccaaggtgtgtctgaggtcatggaaacggaaatcttcCTCa > 2:2355458‑M2/47‑50 (MQ=255) cagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCAtt < 2:1506027‑M2/6‑1 (MQ=255) cagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCAtt > 2:2043408‑M2/45‑50 (MQ=255) cagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCAtt > 1:2614934‑M2/45‑50 (MQ=255) agcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCAttt < 2:2700278‑M2/7‑1 (MQ=255) agcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCAttt < 1:3036885‑M2/7‑1 (MQ=255) agcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCAttt < 1:4900218‑M2/7‑1 (MQ=255) agcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCAtt > 2:3689905‑M2/44‑49 (MQ=255) agcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCAtt > 1:549807‑M2/44‑49 (MQ=255) gcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTa > 2:938022‑M2/43‑50 (MQ=255) gcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTa > 2:1471439‑M2/43‑50 (MQ=255) gcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTa < 2:3108348‑M2/8‑1 (MQ=255) gcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTa < 2:699020‑M2/8‑1 (MQ=255) gcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTa < 2:3532793‑M2/8‑1 (MQ=255) gcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTa > 1:2146894‑M2/43‑50 (MQ=255) cttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTAt < 2:1824274‑M2/9‑1 (MQ=255) cttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTAt < 1:5242186‑M2/9‑1 (MQ=255) cttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTAt < 2:65981‑M2/9‑1 (MQ=255) gcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGc < 2:504715‑M2/11‑1 (MQ=255) tccaggtgtgtctgaggtcatggcaacggaaatcttaCTCATTTATGcc < 2:141237‑M2/12‑1 (MQ=255) cccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGccc < 1:2456495‑M2/13‑1 (MQ=255) cccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGccc < 2:4771763‑M2/13‑1 (MQ=255) cccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGccc > 1:4657718‑M2/38‑50 (MQ=255) cccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGccc < 2:2119624‑M2/13‑1 (MQ=255) cccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGcc < 1:5688211‑M2/12‑1 (MQ=255) cccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGcc < 2:1550705‑M2/12‑1 (MQ=255) ccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCg > 1:43640‑M2/37‑50 (MQ=255) ccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCg < 1:3513026‑M2/14‑1 (MQ=255) caggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGt < 2:1077242‑M2/15‑1 (MQ=255) ggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCt < 1:5562240‑M2/17‑1 (MQ=255) ggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCt < 2:2586716‑M2/17‑1 (MQ=255) gtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCtt < 1:1807335‑M2/18‑1 (MQ=255) gtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCtt < 1:3147051‑M2/18‑1 (MQ=255) gtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCtt < 2:5686447‑M2/18‑1 (MQ=255) tgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTa < 1:2945359‑M2/19‑1 (MQ=255) gtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTAt > 2:1910547‑M2/31‑50 (MQ=255) tgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTAt < 2:3154779‑M2/20‑1 (MQ=255) tgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTAt < 2:5189384‑M2/20‑1 (MQ=255) tgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATc > 1:2095868‑M2/30‑50 (MQ=255) tgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATc < 2:2453909‑M2/21‑1 (MQ=255) tgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATc < 1:344977‑M2/21‑1 (MQ=255) tgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATc < 1:5642785‑M2/21‑1 (MQ=255) tctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATcc < 1:3713368‑M2/22‑1 (MQ=255) tctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATcc < 1:5398106‑M2/22‑1 (MQ=255) tctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCg > 1:4748928‑M2/28‑50 (MQ=255) tctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCg > 2:5268537‑M2/28‑50 (MQ=255) ctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGt > 1:3944048‑M2/27‑50 (MQ=255) ctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGt > 2:2122255‑M2/27‑50 (MQ=255) aggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGttt < 2:2494879‑M2/26‑1 (MQ=255) aggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGtt < 2:5452737‑M2/25‑1 (MQ=255) aggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTc < 2:853545‑M2/27‑1 (MQ=255) agggcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGtt < 2:3858503‑M2/25‑1 (MQ=255) ggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTcc < 1:741713‑M2/28‑1 (MQ=255) ggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTcc < 1:4487181‑M2/28‑1 (MQ=255) ggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTcc < 1:3126762‑M2/28‑1 (MQ=255) gtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCg < 1:3658419‑M2/29‑1 (MQ=255) gtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCg > 2:4703504‑M2/22‑50 (MQ=255) gtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCg > 1:946580‑M2/22‑50 (MQ=255) tcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGc > 1:1020946‑M2/21‑50 (MQ=255) catggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCt > 2:3167098‑M2/20‑50 (MQ=255) atggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCtt < 2:156527‑M2/32‑1 (MQ=255) tggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCttt < 1:4096097‑M2/33‑1 (MQ=255) tggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCttt < 2:4370977‑M2/33‑1 (MQ=255) ggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTg > 1:3150045‑M2/17‑50 (MQ=255) ggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTg > 1:185092‑M2/17‑50 (MQ=255) gaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGc > 1:4160392‑M2/16‑50 (MQ=255) gaaacggaaatcttcCTCATTGATGCCCGTCTTATCCGTTTCCGCTTTGc > 2:419236‑M2/16‑50 (MQ=255) aaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGcc > 1:1577509‑M2/15‑50 (MQ=255) aacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGccc < 2:4698506‑M2/37‑1 (MQ=255) acggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCt < 1:2842437‑M2/38‑1 (MQ=255) acggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCt > 1:2494972‑M2/13‑50 (MQ=255) acggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCt > 1:1974966‑M2/13‑50 (MQ=255) cggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCtt < 2:1733592‑M2/39‑1 (MQ=255) cggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCtt < 2:1971378‑M2/39‑1 (MQ=255) cggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCtt > 2:2825960‑M2/12‑50 (MQ=255) cggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCtt > 1:2693125‑M2/12‑50 (MQ=255) gaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTca > 1:5037466‑M2/10‑50 (MQ=255) gaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTca < 1:3415231‑M2/41‑1 (MQ=255) gaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTca > 2:3315474‑M2/10‑50 (MQ=255) aaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTcac > 2:4330921‑M2/9‑50 (MQ=255) aatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTcacc < 1:4028326‑M2/43‑1 (MQ=255) aatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTcacc < 1:1377846‑M2/43‑1 (MQ=255) aatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTcac > 2:1030474‑M2/8‑49 (MQ=255) aatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTcac > 1:1121611‑M2/8‑49 (MQ=255) atcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTcacca > 2:5143945‑M2/7‑50 (MQ=255) tcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTcacca > 2:3213196‑M2/6‑49 (MQ=255) ttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACAt > 1:1386694‑M2/4‑50 (MQ=255) cCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTcaccac < 2:3098507‑M2/45‑1 (MQ=255) cCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACATCa > 1:2653287‑M2/2‑50 (MQ=255) | CTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTTCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACATCA > NC_000913/586060‑586157 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |