| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,400,325 | Δ81,931 bp | [abgT]–[azoR] | 87 genes [abgT], abgB, abgA, abgR, mcaS, smrA, dgcM, zntB, fnrS, ynaL, dbpA, ttcA, intR, xisR, rcbA, ralA, ralR, recT, recE, racC, ydaE, kilR, sieB, ydaF, ydaG, racR, ydaS, ydaT, ydaU, ydaV, ydaW, rzpR, rzoR, trkG, ynaK, ydaY, ynaA, lomR, insH‑5, lomR, stfR, tfaR, pinR, ynaE, ynaM, ttcC, uspF, ompN, micC, ydbK, ydbJ, hslJ, ldhA, ydbH, ynbE, ydbL, feaR, feaB, tynA, paaZ, paaA, paaB, paaC, paaD, paaE, paaF, paaG, paaH, paaI, paaJ, paaK, paaX, paaY, ynbG, ydbA, insD‑2, insC‑2, ydbA, insI‑2, ydbA, pdxI, ydbD, ynbA, ynbB, ynbC, ynbD, [azoR] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1400325 | 1482255 | 81931 | 149 [1] | [0] 142 | [abgT]–[azoR] | [abgT],abgB,abgA,abgR,mcaS,smrA,dgcM,zntB,fnrS,ynaL,dbpA,ttcA,intR,xisR,rcbA,ralA,ralR,recT,recE,racC,ydaE,kilR,sieB,ydaF,ydaG,racR,ydaS,ydaT,ydaU,ydaV,ydaW,rzpR,rzoR,trkG,ynaK,ydaY,ynaA,lomR,insH‑5,lomR,stfR,tfaR,pinR,ynaE,ynaM,ttcC,uspF,ompN,micC,ydbK,ydbJ,hslJ,ldhA,ydbH,ynbE,ydbL,feaR,feaB,tynA,paaZ,paaA,paaB,paaC,paaD,paaE,paaF,paaG,paaH,paaI,paaJ,paaK,paaX,paaY,ynbG,ydbA,insD‑2,insC‑2,ydbA,insI‑2,ydbA,pdxI,ydbD,ynbA,ynbB,ynbC,ynbD,[azoR] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1400324 | 1 (0.010) | 140 (0.940) | 65/98 | 0.0 | 99.6% | coding (1450/1527 nt) | abgT | p‑aminobenzoyl glutamate:H(+) symporter |
| ? | NC_000913 | 1482256 = | 0 (0.000) | coding (605/606 nt) | azoR | FMN dependent NADH:quinone oxidoreductase | |||||
Only 100 of 149 total aligned reads displayed.
GACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGGCAAGACTAACGAATAGTAAGTACC > NC_000913/1400273‑1400372 | gACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATac > 1:4161126/1‑50 (MQ=255)gACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATac < 2:2709892/50‑1 (MQ=255)gACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATac < 1:2444096/50‑1 (MQ=255)gACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATac > 2:5048060/1‑50 (MQ=255)gACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATac > 2:129906/1‑50 (MQ=255) acctATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACt < 2:1654383‑M1/49‑2 (MQ=255) acctATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACt < 2:2892058‑M1/49‑2 (MQ=255) ccTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACta < 1:431644‑M1/50‑3 (MQ=255) cTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtat < 1:48262‑M1/50‑4 (MQ=255) cTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtat < 1:4789921‑M1/50‑4 (MQ=255) cTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtat < 1:3636946‑M1/50‑4 (MQ=255) cTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtat > 2:3025092‑M1/1‑47 (MQ=255) cTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtat > 1:741816‑M1/1‑47 (MQ=255) tCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCCGCCCTaccatg > 2:2368035/1‑46 (MQ=16) tCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgc < 2:3648068‑M1/49‑6 (MQ=255) tCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgc < 2:2321106‑M1/49‑6 (MQ=255) tCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatg < 2:4128520‑M1/48‑5 (MQ=255) cGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatg > 1:2131196‑M1/1‑43 (MQ=255) ggCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcaga < 1:3184254‑M1/50‑9 (MQ=255) ggCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcaga < 1:4869995‑M1/50‑9 (MQ=255) ggCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcaga < 2:1756555‑M1/50‑9 (MQ=255) ggCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcaga < 2:3479211‑M1/50‑9 (MQ=255) ggCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcag > 2:879594‑M1/1‑42 (MQ=255) ggCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcag > 2:861885‑M1/1‑42 (MQ=255) ggCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcag > 2:3379439‑M1/1‑42 (MQ=255) ggCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcag > 1:45351‑M1/1‑42 (MQ=255) ggCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcag < 1:4107620‑M1/49‑8 (MQ=255) gCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaa < 2:3969969‑M1/50‑10 (MQ=255) aGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaac < 2:5659964‑M1/50‑12 (MQ=255) aGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaa > 1:4481053‑M1/1‑39 (MQ=255) aGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaa > 2:3443404‑M1/1‑39 (MQ=255) aGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaa > 1:2346319‑M1/1‑39 (MQ=255) gACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaaca < 2:1934641‑M1/50‑13 (MQ=255) gACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaac > 2:469216‑M1/1‑38 (MQ=255) ccGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaat < 1:4864042‑M1/50‑15 (MQ=255) ccGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaat < 1:167286‑M1/50‑15 (MQ=255) ccGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaat < 1:3951220‑M1/50‑15 (MQ=255) cGACATGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatg < 2:2496700‑M1/50‑16 (MQ=255) cGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatg < 2:849908‑M1/50‑16 (MQ=255) cGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatg > 1:5499760‑M1/1‑35 (MQ=255) gACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgc < 1:583598‑M1/50‑17 (MQ=255) aCAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgct < 1:3413822‑M1/50‑18 (MQ=255) cAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctg < 1:5407086‑M1/50‑19 (MQ=255) cAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctg > 1:5690017‑M1/1‑32 (MQ=255) cAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctg > 1:856107‑M1/1‑32 (MQ=255) aaGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgt < 1:1791080‑M1/50‑20 (MQ=255) aaGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgt > 1:3832447‑M1/1‑31 (MQ=255) aaGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgt > 2:4919758‑M1/1‑31 (MQ=255) aaGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgt < 2:4290917‑M1/50‑20 (MQ=255) gATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcg < 1:1088436‑M1/50‑22 (MQ=255) tcccacGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgat < 1:3956410‑M1/48‑24 (MQ=255) tACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgat < 1:2102657‑M1/50‑24 (MQ=255) tACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgat < 1:2045150‑M1/50‑24 (MQ=255) tACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgat < 2:3648561‑M1/50‑24 (MQ=255) aCCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatg > 1:1564059‑M1/1‑26 (MQ=255) aCCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatg > 1:331991‑M1/1‑26 (MQ=255) ccACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatg < 1:3222170‑M1/49‑25 (MQ=255) ccAAGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatg < 2:57196‑M1/49‑25 (MQ=255) cACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggc > 1:3053090‑M1/1‑24 (MQ=255) cACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggc > 1:2353188‑M1/1‑24 (MQ=255) aCGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggct > 1:2960382‑M1/1‑23 (MQ=255) aCGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggct < 2:1932833‑M1/50‑28 (MQ=255) cGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggctg < 1:9603‑M1/50‑29 (MQ=255) cGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggctg < 1:3237429‑M1/50‑29 (MQ=255) cGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggctg < 2:2469998‑M1/50‑29 (MQ=255) gCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggctgc > 2:4144321‑M1/1‑21 (MQ=255) gCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggctgc > 2:4321077‑M1/1‑21 (MQ=255) tcgcagccaTACtatgcagaaacaatgctgtcgatggctgcttttgcgtc < 2:5646724‑M1/48‑39 (MQ=255) tcgcagccaTACtatgcagaaacaatgctgtcgatggctgcttttgcgt > 2:2860610‑M1/3‑12 (MQ=255) gcagcCATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcag < 1:3545679‑M1/50‑41 (MQ=255) gcagcCATACtatgcagaaacaatgctgtcgatggctgcttttgcgtca < 2:3896013‑M1/49‑40 (MQ=255) gcagcCATACtatgcagaaacaatgctgtcgatggctgcttttgcgt > 1:2746252‑M1/1‑10 (MQ=255) gcagcCATACtatgcagaaacaatgctgtcgatggctgcttttgcgt > 2:1578234‑M1/1‑10 (MQ=255) cagcCATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcaga > 2:1159487‑M1/1‑9 (MQ=255) cagcCATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcaga > 1:2379574‑M1/1‑9 (MQ=255) cagcCATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcaga > 1:3135579‑M1/1‑9 (MQ=255) cagcCATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcaga < 1:353850‑M1/50‑42 (MQ=255) agcCATACtatgcagaaacaatgctgtcggtggctgcttttgcgtcagac > 2:2119817‑M1/1‑8 (MQ=255) agcCATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagac > 1:3211901‑M1/1‑8 (MQ=255) agcCATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagac > 1:1706865‑M1/1‑8 (MQ=255) agcCATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagac > 2:1017368‑M1/1‑8 (MQ=255) gcCATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagact < 2:5453001‑M1/50‑44 (MQ=255) gcCATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagact > 1:1494021‑M1/1‑7 (MQ=255) gcCATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagact > 1:2591096‑M1/1‑7 (MQ=255) ccATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagactg > 2:4753266‑M1/1‑6 (MQ=255) ccATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagactg > 1:5346420‑M1/1‑6 (MQ=255) cATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgt > 2:92967‑M1/1‑5 (MQ=255) cATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgt > 2:2645531‑M1/1‑5 (MQ=255) aTACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgtg < 2:2148730‑M1/50‑47 (MQ=255) aTACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgtg > 1:4210341‑M1/1‑4 (MQ=255) aTACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgtg > 2:5286747‑M1/1‑4 (MQ=255) aTACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgtg > 2:1322612‑M1/1‑4 (MQ=255) tACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgtgc < 2:5353646‑M1/50‑48 (MQ=255) tACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgtgc > 1:5620317‑M1/1‑3 (MQ=255) tACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgtgc < 2:120072‑M1/50‑48 (MQ=255) tACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgtgc > 2:1896088‑M1/1‑3 (MQ=255) tACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgtgc > 2:3017895‑M1/1‑3 (MQ=255) aCtatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgtgct > 1:3129649‑M1/1‑2 (MQ=255) ctatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgtgct < 2:3343393‑M1/49‑49 (MQ=255) ctatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgtgct < 2:1380875‑M1/49‑49 (MQ=255) | GACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGGCAAGACTAACGAATAGTAAGTACC > NC_000913/1400273‑1400372 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |