| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,400,325 | Δ81,931 bp | [abgT]–[azoR] | 87 genes [abgT], abgB, abgA, abgR, mcaS, smrA, dgcM, zntB, fnrS, ynaL, dbpA, ttcA, intR, xisR, rcbA, ralA, ralR, recT, recE, racC, ydaE, kilR, sieB, ydaF, ydaG, racR, ydaS, ydaT, ydaU, ydaV, ydaW, rzpR, rzoR, trkG, ynaK, ydaY, ynaA, lomR, insH‑5, lomR, stfR, tfaR, pinR, ynaE, ynaM, ttcC, uspF, ompN, micC, ydbK, ydbJ, hslJ, ldhA, ydbH, ynbE, ydbL, feaR, feaB, tynA, paaZ, paaA, paaB, paaC, paaD, paaE, paaF, paaG, paaH, paaI, paaJ, paaK, paaX, paaY, ynbG, ydbA, insD‑2, insC‑2, ydbA, insI‑2, ydbA, pdxI, ydbD, ynbA, ynbB, ynbC, ynbD, [azoR] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1400325 | 1482255 | 81931 | 149 [1] | [0] 142 | [abgT]–[azoR] | [abgT],abgB,abgA,abgR,mcaS,smrA,dgcM,zntB,fnrS,ynaL,dbpA,ttcA,intR,xisR,rcbA,ralA,ralR,recT,recE,racC,ydaE,kilR,sieB,ydaF,ydaG,racR,ydaS,ydaT,ydaU,ydaV,ydaW,rzpR,rzoR,trkG,ynaK,ydaY,ynaA,lomR,insH‑5,lomR,stfR,tfaR,pinR,ynaE,ynaM,ttcC,uspF,ompN,micC,ydbK,ydbJ,hslJ,ldhA,ydbH,ynbE,ydbL,feaR,feaB,tynA,paaZ,paaA,paaB,paaC,paaD,paaE,paaF,paaG,paaH,paaI,paaJ,paaK,paaX,paaY,ynbG,ydbA,insD‑2,insC‑2,ydbA,insI‑2,ydbA,pdxI,ydbD,ynbA,ynbB,ynbC,ynbD,[azoR] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1400324 | 1 (0.010) | 140 (0.940) | 65/98 | 0.0 | 99.6% | coding (1450/1527 nt) | abgT | p‑aminobenzoyl glutamate:H(+) symporter |
| ? | NC_000913 | 1482256 = | 0 (0.000) | coding (605/606 nt) | azoR | FMN dependent NADH:quinone oxidoreductase | |||||
Only 100 of 142 total aligned reads displayed.
TTGAGATGTGGACTGAATATCTACAGTCCACATCAAGACCGTGTCCGGTTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCTTT > NC_000913/1482207‑1482305 | acctatcggcagaccgacaagataccacgccagcacatcgcagccatact < 2:2892058‑M2/1‑1 (MQ=255) cctatcggcagaccgacaagataccacgccagcacatcgcagccatacTa < 1:431644‑M2/2‑1 (MQ=255) cctatcggcagaccgacaagataccacgccagcacatcgcagccatacTa > 1:4871424‑M2/49‑50 (MQ=255) ctatcggcagaccgacaagataccacgccagcacatcgcagccatacTAt < 1:3636946‑M2/3‑1 (MQ=255) ctatcggcagaccgacaagataccacgccagcacatcgcagccatacTAt > 1:741816‑M2/48‑50 (MQ=255) ctatcggcagaccgacaagataccacgccagcacatcgcagccatacTAt < 1:4789921‑M2/3‑1 (MQ=255) ctatcggcagaccgacaagataccacgccagcacatcgcagccatacTAt > 2:3025092‑M2/48‑50 (MQ=255) atcggcagaccgacaagataccacgccagcacatcgcagccatacTATg > 2:565829‑M2/46‑49 (MQ=255) atcggcagaccgacaagataccacgccagcacatcgcagccatacTATg > 2:5359301‑M2/46‑49 (MQ=255) tcggcagaccgacaagataccacgccagcacatcgcagccatacTATg < 2:4128520‑M2/4‑1 (MQ=255) tcggcagaccgacaagataccacgccagcacatcgcagccatacTATGc < 2:2321106‑M2/5‑1 (MQ=255) cggcagaccgacaagataccacgccagcacatcgcagccatacTATg > 1:2131196‑M2/44‑47 (MQ=255) ggcagaccgacaagataccacgccagcacatcgcagccatacTATGCAg > 2:879594‑M2/43‑49 (MQ=255) ggcagaccgacaagataccacgccagcacatcgcagccatacTATGCAg > 1:4329054‑M2/43‑49 (MQ=255) ggcagaccgacaagataccacgccagcacatcgcagccatacTATGCAg < 1:4107620‑M2/7‑1 (MQ=255) ggcagaccgacaagataccacgccagcacatcgcagccatacTATGCAg > 1:45351‑M2/43‑49 (MQ=255) ggcagaccgacaagataccacgccagcacatcgcagccatacTATGCAg > 2:861885‑M2/43‑49 (MQ=255) ggcagaccgacaagataccacgccagcacatcgcagccatacTATGCAg > 1:4832358‑M2/43‑49 (MQ=255) ggcagaccgacaagataccacgccagcacatcgcagccatacTATGCAg > 2:3379439‑M2/43‑49 (MQ=255) ggcagaccgacaagataccacgccagcacatcgcagccatacTATGCAGa < 2:1756555‑M2/8‑1 (MQ=255) ggcagaccgacaagataccacgccagcacatcgcagccatacTATGCAGa < 2:3479211‑M2/8‑1 (MQ=255) ggcagaccgacaagataccacgccagcacatcgcagccatacTATGCAGa < 1:3184254‑M2/8‑1 (MQ=255) gcagaccgacaagataccacgccagcacatcgcagccatacTATGCAGaa < 2:3969969‑M2/9‑1 (MQ=255) cagaccgacaagataccacgccagcacatcgcagccatacTATGCAGaaa > 1:1765672‑M2/41‑50 (MQ=255) agaccgacaagataccacgccagcacatcgcagccatacTATGCAGaaa > 2:3166656‑M2/40‑49 (MQ=255) agaccgacaagataccacgccagcacatcgcagccatacTATGCAGaaa > 1:2346319‑M2/40‑49 (MQ=255) agaccgacaagataccacgccagcacatcgcagccatacTATGCAGAAAc < 2:5659964‑M2/11‑1 (MQ=255) gaccgacaagataccacgccagcacatcgcagccatacTATGCAGAAAc > 2:469216‑M2/39‑49 (MQ=255) accgacaagataccacgccagcacatcgcagccatacTATGCAGAAACaa > 2:2451490‑M2/38‑50 (MQ=255) ccgacaagataccacgccagcacatcgcagccatacTATGCAGAAACAAt < 1:4864042‑M2/14‑1 (MQ=255) ccgacaagataccacgccagcacatcgcagccatacTATGCAGAAACAAt < 1:3951220‑M2/14‑1 (MQ=255) ccgacaagataccacgccagcacatcgcagccatacTATGCAGAAACAAt < 1:167286‑M2/14‑1 (MQ=255) cgacatgataccacgccagcacatcgcagccatacTATGCAGAAACAATg < 2:2496700‑M2/15‑1 (MQ=255) cgacaagataccacgccagcacatcgcagccatacTATGCAGAAACAATg > 1:5499760‑M2/36‑50 (MQ=255) cgacaagataccacgccagcacatcgcagccatacTATGCAGAAACAATg < 2:849908‑M2/15‑1 (MQ=255) cgacaagataccacgccagcacatcgcagccatacTATGCAGAAACAATg < 2:2636384‑M2/15‑1 (MQ=255) cgacaagataccacgccagcacatcgcagccatacTATGCAGAAACAATg < 1:2861479‑M2/15‑1 (MQ=255) gacaagataccacgccagcacatcgcagccatacTATGCAGAAACAATGc < 1:583598‑M2/16‑1 (MQ=255) acaagataccacgccagcacatcgcagccatacTATGCAGAAACAATGCt < 1:3413822‑M2/17‑1 (MQ=255) acaagataccacgccagcacatcgcagccatacTATGCAGAAACAATGCt < 2:425361‑M2/17‑1 (MQ=255) caagataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTg > 1:856107‑M2/33‑50 (MQ=255) caagataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTg > 1:5690017‑M2/33‑50 (MQ=255) aagataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGt < 1:1791080‑M2/19‑1 (MQ=255) aagataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGt < 2:4290917‑M2/19‑1 (MQ=255) agataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTc < 1:3907528‑M2/20‑1 (MQ=255) gataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCg < 1:1088436‑M2/21‑1 (MQ=255) ataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGa > 1:31150‑M2/29‑50 (MQ=255) ataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGa < 1:4032372‑M2/22‑1 (MQ=255) taccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGAt > 1:5423025‑M2/28‑50 (MQ=255) taccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGAt < 1:2102657‑M2/23‑1 (MQ=255) taccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGAt < 2:3648561‑M2/23‑1 (MQ=255) taccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGAt < 2:4777077‑M2/23‑1 (MQ=255) taccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGAt < 1:2045150‑M2/23‑1 (MQ=255) taccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGAt > 1:458190‑M2/28‑50 (MQ=255) accacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATg > 1:331991‑M2/27‑50 (MQ=255) ccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATg < 1:3222170‑M2/24‑1 (MQ=255) ccacgccagcacatcgcagccatacTATGCAGAAACAATACTGTCGATgg < 2:3495378‑M2/25‑1 (MQ=255) ccaagccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATg < 2:57196‑M2/24‑1 (MQ=255) cacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATGgc > 1:2353188‑M2/25‑50 (MQ=255) acgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATGgct > 1:2960382‑M2/24‑50 (MQ=255) acgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATGgct < 2:1932833‑M2/27‑1 (MQ=255) cgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATGgctg < 1:3237429‑M2/28‑1 (MQ=255) cgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATGgctg > 1:2451668‑M2/23‑50 (MQ=255) cgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATGgctg < 1:9603‑M2/28‑1 (MQ=255) cgccagcacatcgcaaccatacTATGCAGAAACAATGCTGTCGATGgctg < 2:5258645‑M2/28‑1 (MQ=255) tcgcagccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGt > 2:2860610‑M2/13‑49 (MQ=255) gcagccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGt > 2:1578234‑M2/11‑47 (MQ=255) cagccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGa < 1:353850‑M2/41‑1 (MQ=255) cagccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGa > 1:3135579‑M2/10‑50 (MQ=255) cagccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGa < 1:4185946‑M2/41‑1 (MQ=255) cagccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGa < 2:3974994‑M2/41‑1 (MQ=255) cagccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGa > 2:1159487‑M2/10‑50 (MQ=255) cagccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGa > 1:2379574‑M2/10‑50 (MQ=255) agccatacTATGCAGAAACAATGCTGTCGGTGGCTGCTTTTGCGTCAGAc > 2:2119817‑M2/9‑50 (MQ=255) agccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGAc > 1:3211901‑M2/9‑50 (MQ=255) agccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGAc > 2:1017368‑M2/9‑50 (MQ=255) agccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGAc > 2:148225‑M2/9‑50 (MQ=255) gccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACt > 1:1494021‑M2/8‑50 (MQ=255) gccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACt > 1:2591096‑M2/8‑50 (MQ=255) gccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACt < 2:5453001‑M2/43‑1 (MQ=255) gccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACt < 2:1928930‑M2/43‑1 (MQ=255) ccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACtg > 1:5346420‑M2/7‑50 (MQ=255) ccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACtg > 2:4753266‑M2/7‑50 (MQ=255) ccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACtg < 1:360066‑M2/44‑1 (MQ=255) ccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACtg > 2:1312389‑M2/7‑50 (MQ=255) catacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACtgt > 2:92967‑M2/6‑50 (MQ=255) catacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACtgt > 2:2645531‑M2/6‑50 (MQ=255) catacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACtgt > 2:1695328‑M2/6‑50 (MQ=255) atacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACtgtg > 2:5286747‑M2/5‑50 (MQ=255) atacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACtgtg < 2:2148730‑M2/46‑1 (MQ=255) atacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACtgtg < 1:1657500‑M2/46‑1 (MQ=255) tacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGc > 2:3017895‑M2/4‑50 (MQ=255) tacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGc < 2:120072‑M2/47‑1 (MQ=255) tacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGc > 1:5620317‑M2/4‑50 (MQ=255) acTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCt > 1:3129649‑M2/3‑50 (MQ=255) cTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCtt > 2:371435‑M2/2‑50 (MQ=255) cTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCtt > 2:2058848‑M2/2‑50 (MQ=255) cTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCt < 2:3343393‑M2/48‑1 (MQ=255) cTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCt < 2:1380875‑M2/48‑1 (MQ=255) tATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCttt > 1:1120825/1‑50 (MQ=255) | TTGAGATGTGGACTGAATATCTACAGTCCACATCAAGACCGTGTCCGGTTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCTTT > NC_000913/1482207‑1482305 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |