| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,872,030 | Δ1,437 bp | [dgcJ] | [dgcJ] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1872030 | 1873466 | 1437 | 184 [0] | [0] 188 | [dgcJ] | [dgcJ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1872029 | 0 (0.000) | 180 (1.230) | 74/96 | 0.0 | 100% | intergenic (+169/‑12) | cdgI/dgcJ | putative c‑di‑GMP binding protein CdgI/putative diguanylate cyclase DgcJ |
| ? | NC_000913 | 1873467 = | 0 (0.000) | coding (1427/1491 nt) | dgcJ | putative diguanylate cyclase DgcJ | |||||
Only 100 of 184 total aligned reads displayed.
AGGCCGCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGTGCCATTTATCATGAAATTGCACCATAGAATGCTCCGGCATTTTATCGC > NC_000913/1871980‑1872078 | gCCGCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGat < 1:3435135‑M1/50‑3 (MQ=255) gCCGCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGat < 2:1937418‑M1/50‑3 (MQ=255) ccGCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatg < 2:1496354‑M1/50‑4 (MQ=255) ccGCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatg < 2:3655301‑M1/50‑4 (MQ=255) ccGCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatg > 2:2318455‑M1/1‑47 (MQ=255) cAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcg > 1:2414329‑M1/1‑44 (MQ=255) cAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcg > 1:4766065‑M1/1‑44 (MQ=255) aaTCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgta > 1:3725966‑M1/1‑43 (MQ=255) aaTCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgta > 1:1263814‑M1/1‑43 (MQ=255) aaTCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgta < 2:5164602‑M1/50‑8 (MQ=255) aaTCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgta > 1:4268300‑M1/1‑43 (MQ=255) aaTCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgta > 1:2848421‑M1/1‑43 (MQ=255) aTCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtat < 1:3761284‑M1/50‑9 (MQ=255) tCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtat > 2:3766160‑M1/1‑41 (MQ=255) gAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaa < 2:2738192‑M1/50‑12 (MQ=255) gAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtata > 1:3906249‑M1/1‑39 (MQ=255) gAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtata > 1:5656015‑M1/1‑39 (MQ=255) aaCTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaag > 1:2635503‑M1/1‑38 (MQ=255) aaCTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaag < 2:2163930‑M1/50‑13 (MQ=255) aaCTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaag < 2:4897518‑M1/50‑13 (MQ=255) aaCTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaag > 1:4146053‑M1/1‑38 (MQ=255) aaCTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaag > 1:1085370‑M1/1‑38 (MQ=255) aaCTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaag < 2:1219154‑M1/50‑13 (MQ=255) aaCTTTATCTGGGTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaag > 1:4859457‑M1/1‑38 (MQ=255) aCTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaagc < 1:2165364‑M1/50‑14 (MQ=255) aCTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaagc > 1:2022822‑M1/1‑37 (MQ=255) aCTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaagc > 1:619450‑M1/1‑37 (MQ=255) cTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaagct > 2:1137404‑M1/1‑36 (MQ=255) cTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaagct > 2:4366096‑M1/1‑36 (MQ=255) tATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttc < 1:3319789‑M1/49‑17 (MQ=255) tATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttc < 1:4544845‑M1/49‑17 (MQ=255) aTCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttcc < 1:4509214‑M1/49‑18 (MQ=255) aTCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttcc < 2:4509114‑M1/49‑18 (MQ=255) aTCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttcc < 2:1864703‑M1/49‑18 (MQ=255) aTCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttcc < 2:138355‑M1/49‑18 (MQ=255) aTCTGGTTTTCTCGTTTCACTAACCGAAGGAGatacgtataaagcttcc > 2:1411041‑M1/1‑32 (MQ=255) cTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttccgat > 2:839122‑M1/1‑30 (MQ=255) ggTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttccgat > 2:3894927‑M1/1‑28 (MQ=255) ggTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttccgat > 1:4246840‑M1/1‑28 (MQ=255) gTTTTCTCGTTTCACTAACCGAAGGAGatgcgtttaaagcttccgat < 2:4250438‑M1/47‑21 (MQ=255) gTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttccgatgag < 1:1433691‑M1/50‑24 (MQ=255) gTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttccgatga < 1:967831‑M1/49‑23 (MQ=255) gTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttccgatga < 1:667511‑M1/49‑23 (MQ=255) gTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttccgatga < 2:2963450‑M1/49‑23 (MQ=255) gTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttccgatga < 2:1658641‑M1/49‑23 (MQ=255) gTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttccgat < 2:592384‑M1/47‑21 (MQ=255) gTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttccgat < 1:1183639‑M1/47‑21 (MQ=255) gTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttccga < 1:737680‑M1/46‑20 (MQ=255) ttttCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttccgatgagc < 2:1844540‑M1/50‑25 (MQ=255) ttttCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttccgatgagc > 1:1035630‑M1/1‑26 (MQ=255) ttttCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttccgatgagc > 1:857395‑M1/1‑26 (MQ=255) ttttCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttccgatgag < 2:4081544‑M1/49‑24 (MQ=255) tttCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttccgatgagcg > 2:2238350‑M1/1‑25 (MQ=255) ttCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttccgatgagcgt > 1:1053220‑M1/1‑24 (MQ=255) ttCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttccgatgagcg < 1:3356536‑M1/49‑26 (MQ=255) ttCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttccgatgagcg < 2:444710‑M1/49‑26 (MQ=255) ttCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttccgatcagcgt > 2:364064‑M1/1‑24 (MQ=255) tctcGTTTCACTAACCGAAGGAGatgcgtataaagcttccgatgagcgt < 1:2764199‑M1/49‑27 (MQ=255) cGTTTCACTAACCGAAGGAGatgcgtataaagcttccgatgagcgttta > 2:4718815‑M1/1‑20 (MQ=255) gattcaCTAACCGAAGGAGatgcgtataaagcttccgatgagcgtttata > 1:4994726‑M1/3‑19 (MQ=255) gTTTCACTAACCGAAGGAGatgcgtataaagcttccgatgagcgtttata > 2:924543‑M1/1‑19 (MQ=255) gTTTCACTAACCGAAGGAGatgcgtataaagcttccgatgagcgtttata > 2:507128‑M1/1‑19 (MQ=255) gTTTCACTAACCGAAGGAGatgcgtataaagcttccgatgagcgtttata > 1:550696‑M1/1‑19 (MQ=255) gTTTCACTAACCGAAGGAGatgcgtataaagcttccgatgagcgtttata > 1:920002‑M1/1‑19 (MQ=255) gTTTCACTAACCGAAGGAGatgcgtataaagcttccgatgagcgttta < 2:4267029‑M1/48‑30 (MQ=255) tttCACTAACCGAAGGAGatgcgtataaagcttccgatgagcgtttatat > 2:1050611‑M1/1‑18 (MQ=255) ttCACTAACCGAAGGAGatgcgtataaagcttccgatgagcgtttatatg > 1:5457706‑M1/1‑17 (MQ=255) ttCACTAACCGAAGGAGatgcgtataaagcttccgatgagcgtttatatg > 1:2909631‑M1/1‑17 (MQ=255) tCACTAACCGAAGGAGatgcgtataaagcttccgatgagcgtttatatg < 1:2468493‑M1/49‑34 (MQ=255) tCACTAACCGAAGGAGatgcgtataaagcttccgatgagcgtttatatg < 2:1256895‑M1/49‑34 (MQ=255) cACTAACCGAAGGAGatgcgtataaagcttccgatgagcgtttatatgt > 2:3827223‑M1/1‑15 (MQ=255) aCTAACCGAAGGAGatgcgtataaagcttccgatgagcgtttatatgtca < 1:146991‑M1/50‑37 (MQ=255) aCTAACCGAAGGAGatgcgtataaagcttccgatgagcgtttatatgtca < 2:4586203‑M1/50‑37 (MQ=255) aCTAACCGAAGGAGatgcgtataaagcttccgatgagcgtttatatgtca < 1:2921635‑M1/50‑37 (MQ=255) aCTAACCGAAGGAGatgcgtataaagcttccgatgagcgtttatatgtc < 2:3394496‑M1/49‑36 (MQ=255) aCTAACCGAAGGAGatgcgtataaagcttccgatgagcgtttatatgtc > 2:1158900‑M1/1‑14 (MQ=255) aCTAACCGAAGGAGatgcgtataaagcttccgatgagcgtttatatgtc < 2:814767‑M1/49‑36 (MQ=255) aCTAACCGAAGGAGatgcgtataaagcttccgatgagcgtttatatgtc > 1:5075730‑M1/1‑14 (MQ=255) aCTAACCGAAGGAGatgcgtataaagcttccgatgagcgtttatatgtc < 1:3974054‑M1/49‑36 (MQ=255) tAACCGAAGGAGatgcgtataaagcttccgatgagcgtttatatgtcaa > 1:520566‑M1/1‑12 (MQ=255) tAACCGAAGGAGatgcgtataaagcttccgatgagcgtttatatgtcaa > 2:5353666‑M1/1‑12 (MQ=255) aaCCGAAGGAGatgcgtataaagcttccgatgagcgtttatatgtcaat > 2:714304‑M1/1‑11 (MQ=255) aCCGAAGGAGatgcgtataaagcttccgatgagcgtttatatgtcaataa < 2:4703338‑M1/50‑41 (MQ=255) aCCGAAGGAGatgcgtataaagcttccgatgagcgtttatatgtcaataa < 1:1584676‑M1/50‑41 (MQ=255) aCCGAAGGAGatgcgtataaagcttccgatgagcgtttatatgtcaat < 1:4801537‑M1/48‑39 (MQ=255) aCCGAAGGAGatgcgtataaagcttccgatgagcgtttatatgtcaat < 2:4990491‑M1/48‑39 (MQ=255) ccGAAGGAGatgcgtataaagcttccgatgagcgtttatatgtcaataag > 1:4461699‑M1/1‑9 (MQ=255) ccGAAGGAGatgcgtataaagcttccgatgagcgtttatatggcaataag < 2:24379‑M1/50‑42 (MQ=255) cGAAGGAGatgcgtataaagcttccgatgagcgtttatatgtcaataagc < 1:5164479‑M1/50‑43 (MQ=255) cGAAGGAGatgcgtataaagcttccgatgagcgtttatatgtcaataag > 1:4920717‑M1/1‑8 (MQ=255) gAAGGAGatgcgtataaagcttccgatgagcgtttatatgtcaataagca < 1:228299‑M1/50‑44 (MQ=255) gAAGGAGatgcgtataaagcttccgatgagcgtttatatgtcaataag > 1:1749588‑M1/1‑7 (MQ=255) aaGGAGatgcgtataaagcttccgatgagcgtttatatgtcaataagcag < 1:3118344‑M1/50‑45 (MQ=255) aGGAGatgcgtataaagcttccgatgagcgtttatatgtcaataagcag > 2:325078‑M1/1‑5 (MQ=255) aGGAGatgcgtataaagcttccgatgagcgtttatatgtcaataagcag > 1:226118‑M1/1‑5 (MQ=255) ggAGatgcgtataaagcttccgatgagcgtttatatgtcaataagcagaa > 1:1537164‑M1/1‑4 (MQ=255) gagatgcgtataaagcttccgatgagcgtttatatgtcaataagcagaac < 1:4361405‑M1/50‑48 (MQ=255) gatgcgtataaagcttccgatgagcgtttatatgtcaataagcagaacaa < 2:3579928‑M1/50‑50 (MQ=255) gatgcgtataaagcttccgatgagcgtttatatgtcaataagcagaacaa < 2:2449327‑M1/50‑50 (MQ=255) gatgcgtataaagcttccgatgagcgtttatatgtcaataagcagaaca > 2:5515313‑M1/1‑1 (MQ=255) | AGGCCGCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGTGCCATTTATCATGAAATTGCACCATAGAATGCTCCGGCATTTTATCGC > NC_000913/1871980‑1872078 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |