| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,756,160 | Δ35,091 bp | [intA]–[lhgO] | 33 genes [intA], yfjH, alpA, yfjI, yfjJ, abpB, abpA, yfjM, rnlA, rnlB, yfjP, yfjQ, yfjR, ypjK, yfjS, yfjT, yfjU, yfjV, yfjW, ypjI, yfjX, yfjY, ypjJ, yfjZ, ypjF, ypjA, pinH, ypjB, ypjC, ileY, ygaQ, csiD, [lhgO] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2756160 | 2791250 | 35091 | 173 [0] | [0] 177 | [intA]–[lhgO] | [intA],yfjH,alpA,yfjI,yfjJ,abpB,abpA,yfjM,rnlA,rnlB,yfjP,yfjQ,yfjR,ypjK,yfjS,yfjT,yfjU,yfjV,yfjW,ypjI,yfjX,yfjY,ypjJ,yfjZ,ypjF,ypjA,pinH,ypjB,ypjC,ileY,ygaQ,csiD,[lhgO] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2756159 | 0 (0.000) | 167 (1.140) | 74/96 | 0.0 | 100% | coding (1/1242 nt) | intA | CP4‑57 prophage; integrase |
| ? | NC_000913 | 2791251 = | 0 (0.000) | intergenic (+1/‑22) | lhgO/gabD | L‑2‑hydroxyglutarate oxidase/NADP(+)‑dependent succinate‑semialdehyde dehydrogenase | |||||
Only 100 of 173 total aligned reads displayed.
AACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAA > NC_000913/2756109‑2756208 | aaCGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCA < 2:3004416‑M1/50‑1 (MQ=255)aaCGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCA > 1:1805293‑M1/1‑50 (MQ=255) aCGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAc < 2:3576193‑M1/50‑2 (MQ=255) cGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcc < 1:3878455‑M1/50‑3 (MQ=255) gAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcct < 2:1788101‑M1/50‑4 (MQ=255) gAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcct > 2:3943938‑M1/1‑47 (MQ=255) gAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcct < 1:2398821‑M1/50‑4 (MQ=255) gAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcct > 2:155441‑M1/1‑47 (MQ=255) gAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcct > 2:1532038‑M1/1‑47 (MQ=255) gAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcct < 1:5696415‑M1/50‑4 (MQ=255) gAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcct < 1:866646‑M1/50‑4 (MQ=255) gAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcct < 2:106403‑M1/50‑4 (MQ=255) gAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcct > 2:964954‑M1/1‑47 (MQ=255) aaaaGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctt > 2:1322085‑M1/1‑46 (MQ=255) aaaGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAccttt > 1:4849388‑M1/1‑45 (MQ=255) aaGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAccttt > 1:4305721‑M1/1‑44 (MQ=255) aaGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAccttt > 2:4934875‑M1/1‑44 (MQ=255) aactctatTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttga < 1:3539834‑M1/48‑8 (MQ=255) aGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttga < 1:4603030‑M1/50‑8 (MQ=255) aGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttga < 2:2692759‑M1/50‑8 (MQ=255) gCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaa < 1:4940396‑M1/50‑9 (MQ=255) ctctATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaa < 2:2027045‑M1/50‑10 (MQ=255) ctctATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaa < 2:4415343‑M1/50‑10 (MQ=255) ctctATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaa > 2:5054846‑M1/1‑41 (MQ=255) tATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaa > 2:3418418‑M1/1‑38 (MQ=255) aTTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacag > 1:3481207‑M1/1‑37 (MQ=255) aTTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacag > 2:3784857‑M1/1‑37 (MQ=255) ttGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacagg < 1:1325064‑M1/50‑15 (MQ=255) ttGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacagg < 1:3142116‑M1/50‑15 (MQ=255) ttGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacag < 1:5378532‑M1/49‑14 (MQ=255) ttGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaac < 2:2760668‑M1/47‑12 (MQ=255) gTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggat > 2:1282981‑M1/1‑34 (MQ=255) tttACGTTGGG‑CTAACCGCAGGGAGATTCCCCAcctttgaaaacaggat < 1:1872424‑M1/49‑17 (MQ=255) tttACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatg < 2:4396924‑M1/50‑18 (MQ=255) tttACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatg < 2:1662442‑M1/50‑18 (MQ=255) tttACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggat < 2:654687‑M1/49‑17 (MQ=255) ttACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatg > 2:5005234‑M1/1‑32 (MQ=255) tACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgt < 2:4027171‑M1/49‑19 (MQ=255) tACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatg > 1:599956‑M1/1‑31 (MQ=255) aCGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgta < 2:5016630‑M1/49‑20 (MQ=255) aCGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgta < 1:2041178‑M1/49‑20 (MQ=255) cGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagc < 2:3426184‑M1/50‑22 (MQ=255) cGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagc > 2:4001660‑M1/1‑29 (MQ=255) cGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagc < 2:5401559‑M1/50‑22 (MQ=255) cGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtag < 2:5471346‑M1/49‑21 (MQ=255) gTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcg < 2:4454403‑M1/50‑23 (MQ=255) ttGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcga > 1:3263996‑M1/1‑27 (MQ=255) ggctaAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatga < 1:1127931‑M1/48‑27 (MQ=255) ggctaAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatga < 2:1987585‑M1/48‑27 (MQ=255) ggctaAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatg > 2:4747443‑M1/3‑24 (MQ=255) ggctaAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatg < 1:3824928‑M1/47‑26 (MQ=255) gctAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatga > 1:4446673‑M1/2‑23 (MQ=255) cTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaa > 1:2616019‑M1/1‑22 (MQ=255) tAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaac > 2:2008071‑M1/1‑21 (MQ=255) aaaCGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaact > 1:3352469‑M1/1‑20 (MQ=255) aaCGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaactt < 1:1115726‑M1/50‑32 (MQ=255) aaCGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaactt < 1:3444647‑M1/50‑32 (MQ=255) aaCGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaactt < 2:3238567‑M1/50‑32 (MQ=255) aaCGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaact < 1:498178‑M1/49‑31 (MQ=255) aaCGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaac < 2:62900‑M1/48‑30 (MQ=255) aaCGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaac < 1:198502‑M1/48‑30 (MQ=255) aaCGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaac < 1:5443297‑M1/48‑30 (MQ=255) aCGCAGGGAGACTCCCCGcctttgaaaacaggatgtagcgatgaaactta < 2:379473‑M1/50‑33 (MQ=255) aCGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaactta < 2:1177035‑M1/50‑33 (MQ=255) aCGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaactt > 1:5408804‑M1/1‑18 (MQ=255) cGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgattaaacttaa < 1:28621‑M1/50‑34 (MQ=255) cGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaa < 2:112873‑M1/50‑34 (MQ=255) cGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaa > 2:852957‑M1/1‑17 (MQ=255) gCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaac < 1:1504466‑M1/50‑35 (MQ=255) gCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaac > 1:268198‑M1/1‑16 (MQ=255) cAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacg < 2:705342‑M1/50‑36 (MQ=255) cAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacg < 2:4486591‑M1/50‑36 (MQ=255) aGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacga < 1:1612646‑M1/50‑37 (MQ=255) aGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacga < 1:3559295‑M1/50‑37 (MQ=255) gggAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgac < 1:5560589‑M1/50‑38 (MQ=255) gggAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacga > 1:2496158‑M1/1‑13 (MQ=255) ggAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacga > 2:4201273‑M1/1‑12 (MQ=255) gagaCTCCCCAcctttgaaagcaggatgtagcgatgaaacttaacgacag < 2:267339‑M1/50‑40 (MQ=255) gagaCTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacag > 2:4351859‑M1/1‑11 (MQ=255) gagaCTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacag < 2:1634015‑M1/50‑40 (MQ=255) gaCTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacagta < 2:3162690‑M1/50‑42 (MQ=255) gaCTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacagt > 1:2779426‑M1/1‑9 (MQ=255) aCTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaa > 1:2475520‑M1/1‑8 (MQ=255) aCTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaa > 1:3998027‑M1/1‑8 (MQ=255) aCTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaa < 1:1670689‑M1/50‑43 (MQ=255) aCTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaa < 1:4775705‑M1/50‑43 (MQ=255) aCTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaa < 1:3432077‑M1/50‑43 (MQ=255) cTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaac < 1:4618708‑M1/50‑44 (MQ=255) ccccAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaact > 1:3770679‑M1/1‑5 (MQ=255) cccAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaactt < 1:351606‑M1/49‑46 (MQ=255) cccAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaactt < 2:5458163‑M1/49‑46 (MQ=255) cccAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaactt < 2:4314678‑M1/49‑46 (MQ=255) ccAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaacttat < 2:2810029‑M1/50‑48 (MQ=255) ccAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaacttat > 2:3663142‑M1/1‑3 (MQ=255) ccAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaacttat < 1:3948290‑M1/50‑48 (MQ=255) cAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaacttatt < 1:5128531‑M1/50‑49 (MQ=255) cAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaacttatt < 2:110119‑M1/50‑49 (MQ=255) cAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaacttatt < 2:2544114‑M1/50‑49 (MQ=255) cAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaacttatt < 2:89490‑M1/50‑49 (MQ=255) acctttgaaaacaggatgtagcgatgaaacttaacgacagtaacttattc < 2:215168‑M1/50‑50 (MQ=255) | AACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAA > NC_000913/2756109‑2756208 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |