| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,756,160 | Δ35,091 bp | [intA]–[lhgO] | 33 genes [intA], yfjH, alpA, yfjI, yfjJ, abpB, abpA, yfjM, rnlA, rnlB, yfjP, yfjQ, yfjR, ypjK, yfjS, yfjT, yfjU, yfjV, yfjW, ypjI, yfjX, yfjY, ypjJ, yfjZ, ypjF, ypjA, pinH, ypjB, ypjC, ileY, ygaQ, csiD, [lhgO] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2756160 | 2791250 | 35091 | 173 [0] | [0] 177 | [intA]–[lhgO] | [intA],yfjH,alpA,yfjI,yfjJ,abpB,abpA,yfjM,rnlA,rnlB,yfjP,yfjQ,yfjR,ypjK,yfjS,yfjT,yfjU,yfjV,yfjW,ypjI,yfjX,yfjY,ypjJ,yfjZ,ypjF,ypjA,pinH,ypjB,ypjC,ileY,ygaQ,csiD,[lhgO] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2756159 | 0 (0.000) | 167 (1.140) | 74/96 | 0.0 | 100% | coding (1/1242 nt) | intA | CP4‑57 prophage; integrase |
| ? | NC_000913 | 2791251 = | 0 (0.000) | intergenic (+1/‑22) | lhgO/gabD | L‑2‑hydroxyglutarate oxidase/NADP(+)‑dependent succinate‑semialdehyde dehydrogenase | |||||
Only 100 of 177 total aligned reads displayed.
CGAGCGGCACGTAGTGTGGATGCCTTACACGCCGCATTTAATCAATAACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATTCC > NC_000913/2791203‑2791300 | cgaaaagctctattgtttacgttgggctaaacgcagggagactccccacc > 1:2020708‑M2/49‑50 (MQ=255) gaaaagctctattgtttacgttgggctaaacgcagggagactccccaCCt > 2:964954‑M2/48‑50 (MQ=255) gaaaagctctattgtttacgttgggctaaacgcagggagactccccaCCt < 1:5696415‑M2/3‑1 (MQ=255) gaaaagctctattgtttacgttgggctaaacgcagggagactccccaCCt > 2:1532038‑M2/48‑50 (MQ=255) gaaaagctctattgtttacgttgggctaaacgcagggagactccccaCCt > 2:155441‑M2/48‑50 (MQ=255) gaaaagctctattgtttacgttgggctaaacgcagggagactccccaCCt > 2:4102198‑M2/48‑50 (MQ=255) gaaaagctctattgtttacgttgggctaaacgcagggagactccccaCCt > 2:3943938‑M2/48‑50 (MQ=255) gaaaagctctattgtttacgttgggctaaacgcagggagactccccaCCt < 2:1788101‑M2/3‑1 (MQ=255) gaaaagctctattgtttacgttgggctaaacgcagggagactccccaCCt < 1:2398821‑M2/3‑1 (MQ=255) gaaaagctctattgtttacgttgggctaaacgcagggagactccccaCCt > 2:3324433‑M2/48‑50 (MQ=255) aaaagctctattgtttacgttgggctaaacgcagggagactccccaCCtt > 2:1322085‑M2/47‑50 (MQ=255) aagctctattgtttacgttgggctaaacgcagggagactccccaCCttt > 1:4305721‑M2/45‑49 (MQ=255) aagctctattgtttacgttgggctaaacgcagggagactccccaCCTTTg < 1:3377177‑M2/6‑1 (MQ=255) aagctctattgtttacgttgggctaaacgcagggagactccccaCCTTTg < 1:4803839‑M2/6‑1 (MQ=255) agctctattgtttacgttgggctaaacgcagggagactccccaCCTTTGa < 2:2692759‑M2/7‑1 (MQ=255) agctctattgtttacgttgggctaaacgcagggagactccacaCCTTTg > 2:4236844‑M2/44‑49 (MQ=255) ctctattgtttacgttgggctaaacgcagggagactccccaCCTTTGaa > 1:1374739‑M2/42‑49 (MQ=255) ctctattgtttacgttgggctaaacgcagggagactccccaCCTTTGaa > 2:5054846‑M2/42‑49 (MQ=255) ctattgtttacgttgggctaaacgcagggagactccccaCCTTTGaaaa > 2:4968159‑M2/40‑49 (MQ=255) tattgtttacgttgggctaaacgcagggagactccccaCCTTTGaaaa > 2:3418418‑M2/39‑48 (MQ=255) tattgtttacgttgggctaaacgcagggagactccccaCCTTTGaaaa > 2:1094098‑M2/39‑48 (MQ=255) attgtttacgttgggctaaacgcagggagactccccaCCTTTGAAAACAg > 1:3481207‑M2/38‑50 (MQ=255) ttgtttacgttgggctaaacgcagggagactccccaCCTTTGAAAACAg < 1:5378532‑M2/13‑1 (MQ=255) ttgtttacgttgggctaaacgcagggagactccccaCCTTTGAAAACAg < 2:1243084‑M2/13‑1 (MQ=255) tgtttacgttgggctaaacgcagggagactccccaCCTTTGAAAACAGGa > 1:4912317‑M2/36‑50 (MQ=255) tttacgttgggctaaccgcagggagattccccaCCTTTGAAAACAGGAt < 1:1872424‑M2/16‑1 (MQ=255) tttacgttgggctaaacgcagggagactccccaCCTTTGAAAACAGGAt < 2:654687‑M2/16‑1 (MQ=255) tttacgttgggctaaacgcagggagactccccaCCTTTGAAAACAGGATg > 1:3942319‑M2/34‑50 (MQ=255) tttacgttgggctaaacgcagggagactccccaCCTTTGAAAACAGGATg < 2:4396924‑M2/17‑1 (MQ=255) tacgttgggctaaacgcagggagactccccaCCTTTGAAAACAGGATGt < 1:4358845‑M2/18‑1 (MQ=255) tacgttgggctaaacgcagggagactccccaCCTTTGAAAACAGGATGt < 2:4027171‑M2/18‑1 (MQ=255) acgttgggctaaacgcagggagactccccaCCTTTGAAAACAGGATGTa < 1:2041178‑M2/19‑1 (MQ=255) acgttgggctaaacgcagggagactccccaCCTTTGAAAACAGGATGTa < 2:5016630‑M2/19‑1 (MQ=255) cgttgggctaaacgcagggagactccccaCCTTTGAAAACAGGATGTAg < 1:75545‑M2/20‑1 (MQ=255) cgttgggctaaacgcagggagactccccaCCTTTGAAAACAGGATGTAg < 2:5471346‑M2/20‑1 (MQ=255) cgttgggctaaacgcagggagactccccaCCTTTGAAAACAGGATGTAGc < 1:4581826‑M2/21‑1 (MQ=255) cgttgggctaaacgcagggagactccccaCCTTTGAAAACAGGATGTAGc < 2:5401559‑M2/21‑1 (MQ=255) cgttgggctaaacgcagggagactccccaCCTTTGAAAACAGGATGTAGc > 2:4001660‑M2/30‑50 (MQ=255) gttgggctaaacgcagggagactccccaCCTTTGAAAACAGGATGTAGc > 2:1167418‑M2/29‑49 (MQ=255) gttgggctaaacgcagggagactccccaCCTTTGAAAACAGGATGTAGCg < 2:2112509‑M2/22‑1 (MQ=255) gttgggctaaacgcagggagactccccaCCTTTGAAAACAGGATGTAGCg < 2:1691535‑M2/22‑1 (MQ=255) ttgggctaaacgcagggagactccccaCCTTTGAAAACAGGATGTAGCGa > 1:3263996‑M2/28‑50 (MQ=255) ttgggctaaacgcagggagactccccaCCTTTGAAAACAGGATGTAGCGa < 2:3231876‑M2/23‑1 (MQ=255) ggctaaacgcagggagactccccaCCTTTGAAAACAGGATGTAGCGATg > 2:4469758‑M2/25‑49 (MQ=255) ggctaaacgcagggagactccccaCCTTTGAAAACAGGATGTAGCGATg > 2:4747443‑M2/25‑49 (MQ=255) ggctaaacgcagggagactccccaCCTTTGAAAACAGGATGTAGCGATg < 1:3824928‑M2/25‑1 (MQ=255) ggctaaacgcagggagactccccaCCTTTGAAAACAGGATGTAGCGATGa < 2:1987585‑M2/26‑1 (MQ=255) ggctaaacgcagggagactccccaCCTTTGAAAACAGGATGTAGCGATGa < 1:1127931‑M2/26‑1 (MQ=255) gctaaacgcagggagactccccaCCTTTGAAAACAGGATGTAGCGATGaa < 1:2818538‑M2/27‑1 (MQ=255) ctaaacgcagggagactccccaCCTTTGAAAACAGGATGTAGCGATGaaa < 2:2806419‑M2/28‑1 (MQ=255) taaacgcagggagactccccaCCTTTGAAAACAGGATGTAGCGATGAAAc > 2:2008071‑M2/22‑50 (MQ=255) aaacgcagggagactccccaCCTTTGAAAACAGGATGTAGCGATGAAACt > 1:3521058‑M2/21‑50 (MQ=255) aacgcagggagactccccaCCTTTGAAAACAGGATGTAGCGATGAAAc < 2:62900‑M2/29‑1 (MQ=255) aacgcagggagactccccaCCTTTGAAAACAGGATGTAGCGATGAAAc < 2:2409626‑M2/29‑1 (MQ=255) aacgcagggagactccccaCCTTTGAAAACAGGATGTAGCGATGAAAc < 1:5443297‑M2/29‑1 (MQ=255) aacgcagggagactccccaCCTTTGAAAACAGGATGTAGCGATGAAAc < 1:3438983‑M2/29‑1 (MQ=255) aacgcagggagactccccaCCTTTGAAAACAGGATGTAGCGATGAAACtt < 1:1115726‑M2/31‑1 (MQ=255) aacgcagggagactccccaCCTTTGAAAACAGGATGTAGCGATGAAACt < 2:373994‑M2/30‑1 (MQ=255) aacgcagggagactccccaCCTTTGAAAACAGGATGTAGCGATGAAACt < 1:498178‑M2/30‑1 (MQ=255) aacgcagggagactccccaCCTTTGAAAACAGGATGTAGCGATGAAACt < 1:3554347‑M2/30‑1 (MQ=255) acgcagggagactccccgCCTTTGAAAACAGGATGTAGCGATGAAACTTa < 2:379473‑M2/32‑1 (MQ=255) acgcagggagactccccaCCTTTGAAAACAGGATGTAGCGATGAAACtt > 1:5408804‑M2/19‑49 (MQ=255) acgcagggagactccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTa < 1:926528‑M2/32‑1 (MQ=255) cgcagggagactccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTaa > 2:852957‑M2/18‑50 (MQ=255) cgcagggagactccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTaa > 1:3468026‑M2/18‑50 (MQ=255) cgcagggagactccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTaa > 2:3593373‑M2/18‑50 (MQ=255) cgcagggagactccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTaa > 1:1663457‑M2/18‑50 (MQ=255) gcagggagactccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAAc > 1:268198‑M2/17‑50 (MQ=255) cagggagactccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAAc > 2:3005222‑M2/16‑49 (MQ=255) cagggagactccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACg < 1:2563487‑M2/35‑1 (MQ=255) cagggagactccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACg < 2:5418252‑M2/35‑1 (MQ=255) agggagactccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGa < 1:1612646‑M2/36‑1 (MQ=255) gggagactccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGAc < 1:5560589‑M2/37‑1 (MQ=255) gagactccccaCCTTTGAAAGCAGGATGTAGCGATGAAACTTAACGACAg < 2:267339‑M2/39‑1 (MQ=255) gagactccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAg < 2:1634015‑M2/39‑1 (MQ=255) gagactccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAg < 1:3088969‑M2/39‑1 (MQ=255) agactccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGt < 2:47651‑M2/40‑1 (MQ=255) gactccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTa < 1:3230735‑M2/41‑1 (MQ=255) actccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTaa > 1:3998027‑M2/9‑50 (MQ=255) actccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTaa > 1:2475520‑M2/9‑50 (MQ=255) actccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTaa < 1:1747539‑M2/42‑1 (MQ=255) actccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTaa < 1:4775705‑M2/42‑1 (MQ=255) ctccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAAc < 1:4618708‑M2/43‑1 (MQ=255) tccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACt > 1:2628297‑M2/7‑50 (MQ=255) ccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACt > 1:3770679‑M2/6‑49 (MQ=255) ccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACt > 2:4408512‑M2/6‑49 (MQ=255) ccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGCAACt > 2:3488390‑M2/6‑49 (MQ=255) cccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACt < 2:4314984‑M2/44‑1 (MQ=255) cccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTa < 2:681537‑M2/46‑1 (MQ=255) ccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTAt < 2:4453371‑M2/47‑1 (MQ=255) ccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTAt < 2:2810029‑M2/47‑1 (MQ=255) ccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTAt < 1:3829807‑M2/47‑1 (MQ=255) ccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTAt > 2:3663142‑M2/4‑50 (MQ=255) caCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTAtt < 1:5128531‑M2/48‑1 (MQ=255) caCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTAtt < 2:110119‑M2/48‑1 (MQ=255) caCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTAtt < 2:89490‑M2/48‑1 (MQ=255) aCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATTc < 2:215168‑M2/49‑1 (MQ=255) ccTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATTcc < 1:1287979/50‑1 (MQ=255) ccTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATTcc > 1:5700857/1‑50 (MQ=255) ccTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATTcc < 2:1531653/50‑1 (MQ=255) | CGAGCGGCACGTAGTGTGGATGCCTTACACGCCGCATTTAATCAATAACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATTCC > NC_000913/2791203‑2791300 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |