| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,555,491 | Δ41,523 bp | [yjiC]–lgoD | 37 genes [yjiC], ytiC, ytiD, idlP, iraD, hypT, iadA, yjiG, yjiH, kptA, yjiJ, yjiK, ytiA, yjiL, yjiM, yjiN, mdtM, rpnD, yjiR, yjiS, yjiT, yjiV, mcrC, mcrB, symE, symR, hsdS, hsdM, hsdR, mrr, yjiA, yjiX, btsT, tsr, lgoT, lgoR, lgoD |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4555491 | 4597013 | 41523 | 176 [0] | [0] 180 | [yjiC]–lgoD | [yjiC],ytiC,ytiD,idlP,iraD,hypT,iadA,yjiG,yjiH,kptA,yjiJ,yjiK,ytiA,yjiL,yjiM,yjiN,mdtM,rpnD,yjiR,yjiS,yjiT,yjiV,mcrC,mcrB,symE,symR,hsdS,hsdM,hsdR,mrr,yjiA,yjiX,btsT,tsr,lgoT,lgoR,lgoD |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4555490 | 0 (0.000) | 172 (1.180) | 78/96 | 0.0 | 100% | coding (831/831 nt) | yjiC | uncharacterized protein YjiC |
| ? | NC_000913 | 4597014 = | 0 (0.000) | intergenic (+2/+136) | lgoD/opgB | L‑galactonate oxidoreductase/phosphoglycerol transferase I | |||||
Only 100 of 176 total aligned reads displayed.
TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTTATTTACCAATATAATTCCATTCACCATTTTTTAATTCAAACAGTTCTG > NC_000913/4555442‑4555539 | tAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaag > 2:921363‑M1/1‑47 (MQ=255) tAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaag > 1:4023131‑M1/1‑47 (MQ=255) tAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaag > 1:4832398‑M1/1‑47 (MQ=255) tAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaa < 1:4980851‑M1/49‑3 (MQ=255) tAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaa < 1:1992534‑M1/49‑3 (MQ=255) aGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaagg > 2:5080639‑M1/1‑46 (MQ=255) aGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaagg > 1:4338301‑M1/1‑46 (MQ=255) aGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaag < 1:1374170‑M1/49‑4 (MQ=255) aGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaag < 2:2728157‑M1/49‑4 (MQ=255) gCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggc > 1:4514011‑M1/1‑45 (MQ=255) cTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggc > 2:4710860‑M1/1‑44 (MQ=255) tATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggc > 2:3206605‑M1/1‑43 (MQ=255) tCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcga < 2:4836483‑M1/48‑8 (MQ=255) gTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagatta > 1:720618‑M1/1‑38 (MQ=255) tataACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattat < 1:4093650‑M1/50‑14 (MQ=255) tataACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagatta < 1:2182187‑M1/49‑13 (MQ=255) tataACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagatta < 2:2786333‑M1/49‑13 (MQ=255) tataACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagatt < 1:2696674‑M1/48‑12 (MQ=255) tataACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagatt < 2:2131551‑M1/48‑12 (MQ=255) tataACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagatt < 1:1988375‑M1/48‑12 (MQ=255) tataACCTGAATGTTAGTACTCATTCTTCCTGGAAGTaaggcgagattat > 1:5319614‑M1/1‑37 (MQ=255) ataACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattat > 2:265358‑M1/1‑36 (MQ=255) taACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattatta < 2:803363‑M1/50‑16 (MQ=255) aaCCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattatta > 2:2688962‑M1/1‑34 (MQ=255) aaCCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattatta > 2:2106888‑M1/1‑34 (MQ=255) aCCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaa < 1:5054015‑M1/50‑18 (MQ=255) aCCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaa < 1:4586945‑M1/50‑18 (MQ=255) aCCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaa < 2:2110084‑M1/49‑17 (MQ=255) aCCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaa < 2:4837151‑M1/49‑17 (MQ=255) aCCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattatta > 1:1049973‑M1/1‑33 (MQ=255) ccTGAATTTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaag < 2:3063385‑M1/50‑19 (MQ=255) cTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagt > 2:4200749‑M1/1‑31 (MQ=255) tGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagtt > 2:5184985‑M1/1‑30 (MQ=255) tGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagtt > 2:2916040‑M1/1‑30 (MQ=255) tGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagtt > 1:59210‑M1/1‑30 (MQ=255) aaTGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgc < 2:1662216‑M1/50‑23 (MQ=255) aaTGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttg < 2:34647‑M1/49‑22 (MQ=255) aaTGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagtt < 2:3096828‑M1/48‑21 (MQ=255) aTGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgc > 2:5064799‑M1/1‑27 (MQ=255) tGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgcca < 1:4029613‑M1/50‑25 (MQ=255) tGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgcca < 1:1405066‑M1/50‑25 (MQ=255) tGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgcca > 1:2881858‑M1/1‑26 (MQ=255) tGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgcca > 1:3714598‑M1/1‑26 (MQ=255) gTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccat > 2:5547633‑M1/1‑25 (MQ=255) ttAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatg < 1:3523969‑M1/50‑27 (MQ=255) ttAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccat < 1:155251‑M1/49‑26 (MQ=255) ttAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccat < 2:3568630‑M1/49‑26 (MQ=255) gTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgca < 1:3460771‑M1/49‑29 (MQ=255) gTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgca < 1:4919567‑M1/49‑29 (MQ=255) gTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgca < 1:2922834‑M1/49‑29 (MQ=255) tACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagc < 1:2130841‑M1/50‑31 (MQ=255) aCTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagcg > 2:710739‑M1/1‑19 (MQ=255) aCTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagcg > 2:3848730‑M1/1‑19 (MQ=255) cTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagcg < 2:5369695‑M1/49‑32 (MQ=255) tCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagcgtc > 1:3098061‑M1/1‑17 (MQ=255) aTTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagcgtccg < 1:2392530‑M1/50‑36 (MQ=255) aTTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagcgtccg > 1:2395818‑M1/1‑15 (MQ=255) aTTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagcgtcc < 1:3170723‑M1/49‑35 (MQ=255) aTTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagcgtc < 1:2677273‑M1/48‑34 (MQ=255) ttcttcCTGGTAGTaaggcgagattattaaagttgccatgcagcgtccgg < 1:557300‑M1/50‑37 (MQ=255) ttcttcCTGGTAGTaaggcgagattattaaagttgccatgcagcgtccgg < 1:3145884‑M1/50‑37 (MQ=255) ttcttcCTGGTAGTaaggcgagattattaaagttgccatgcagcgtccgg < 1:4570839‑M1/50‑37 (MQ=255) ttcttcCTGGTAGTaaggcgagattattaaagttgccatgcagcgtccgg > 1:1271481‑M1/1‑14 (MQ=255) ttcttcCTGGTAGTaaggcgagattattaaagttgccatgcagcgtccgg > 1:4205763‑M1/1‑14 (MQ=255) cttcCTGGTAGTaaggcgagattattaaagttgccatgcagcgtccggg < 1:3031690‑M1/49‑38 (MQ=255) cttcCTGGTAGTaaggcgagattattaaagttgccatgcagcgtccggg < 2:2864823‑M1/49‑38 (MQ=255) cttcCTGGTAGTaaggcgagattattaaagttgccatgcagcgtccggg > 2:1009571‑M1/1‑12 (MQ=255) cttcCTGGTAGTaaggcgagattattaaagttgccatgcagcgtccggg < 2:1241764‑M1/49‑38 (MQ=255) cttcCTGGTAGTaaggcgagattattaaagttgccatgcagcgtccggg < 2:4384300‑M1/49‑38 (MQ=255) cttcCTGGTAGTaaggcgagattattaaagttgccatgcagcgtccggg > 2:1316905‑M1/1‑12 (MQ=255) ttcCTGGTAGTaaggcgagattattaaagttgccatgcagcgtccgggg > 1:2956753‑M1/1‑11 (MQ=255) ttcCTGGTAGTaaggcgagattattaaagttgccatgcagcgtccgggg > 1:4256506‑M1/1‑11 (MQ=255) ccTGGTAGTaaggcgagattattaaagttgccatgcagcgtccggggaa < 2:5002524‑M1/49‑41 (MQ=255) ccTGGTAGTaaggcgagattattaaagttgccatgcagcgtccggggaa < 1:1473040‑M1/49‑41 (MQ=255) ccTGGTAGTaaggcgagattattaaagttgccatgcagcgtccggggaa < 2:5098099‑M1/49‑41 (MQ=255) ccTGGTAGTaaggcgagattattaaagttgccatgcagcgtccgggga < 2:558560‑M1/48‑40 (MQ=255) ccTGGTAGTaaggcgagattattaaagttgccatgcagcgtccgggg < 1:1945933‑M1/47‑39 (MQ=255) cTGGTAGTaaggcgagattattaaagttgccatgcagcgtccggggaagt < 1:3690316‑M1/50‑43 (MQ=255) cTGGTAGTaaggcgagattattaaagttgccatgcagcgtccggggaagt < 2:1328918‑M1/50‑43 (MQ=255) cTGGTAGTaaggcgagattattaaagttgccatgcagcgtccggggaagt > 2:503752‑M1/1‑8 (MQ=255) tGGTAGTaaggcgagattattaaagttgccatgcagcgtccggggaagtg > 2:2258166‑M1/1‑7 (MQ=255) tGGTAGTaaggcgagattattaaagttgccatgcagcgtccggggaagtg > 2:2439994‑M1/1‑7 (MQ=255) tGGTAGTaaggcgagattattaaagttgccatgcagcgtccggggaagtg > 2:1939116‑M1/1‑7 (MQ=255) ggTAGTaaggcgagattattaaagttgccatgcagcgtccggggaagtgt > 1:117147‑M1/1‑6 (MQ=255) ggTAGTaaggcgagattattaaagttgccatgcagcgtccggggaagtgt > 1:3985304‑M1/1‑6 (MQ=255) gtagtaaggcgagattattaaagttgccatgcagcgtccggggaagtgtt < 1:1369809‑M1/50‑46 (MQ=255) gtagtaaggcgagattattaaagttgccatgcagcgtccggggaagtgtt > 1:1682127‑M1/1‑5 (MQ=255) gtagtaaggcgagattattaaagttgccatgcagcgtccggggaagtgt < 2:5295217‑M1/49‑45 (MQ=255) tagtaaggcgagattattaaagttgccatgcagcgtccggggaagtgttg > 2:3675394‑M1/1‑4 (MQ=255) agtaaggcgagattattaaagttgccatgcagcgtccggggaagtgttgg > 2:4171569‑M1/1‑3 (MQ=255) agtaaggcgagattattaaagatgccatgcagcgtccggggaagtgttgg > 1:3573622‑M1/1‑3 (MQ=255) gtaaggcgagattattaaagttgccatgcagcgtccggggaagtgttggg < 2:250531‑M1/50‑49 (MQ=255) gtaaggcgagattattaaagttgccatgcagcgtccggggaagtgttggg > 1:608271‑M1/1‑2 (MQ=255) gtaaggcgagattattaaagttgccatgcagcgtccggggaagtgttggg > 1:3215917‑M1/1‑2 (MQ=255) gtaaggcgagattattaaagttgccatgcagcgtccggggaagtgttggg > 1:1129138‑M1/1‑2 (MQ=255) gtaaggcgagattattaaagttgccatgcagcgtccggggaagtgttgg < 2:5249196‑M1/49‑48 (MQ=255) gtaaggcgagattattaaagttgccatgcagcgtccggggaagtgttgg < 1:548858‑M1/49‑48 (MQ=255) gtaaggcgagattattaaagttgccatgcagcgtccggggaagtgttgg < 2:5649730‑M1/49‑48 (MQ=255) taaggcgagattattaaagttgccatgcagcgtccggggaagtgttgggc < 1:1486260‑M1/50‑50 (MQ=255) taaggcgagattattaaagttgccatgcagcgtccggggaagtgttgggc < 2:225771‑M1/50‑50 (MQ=255) | TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTTATTTACCAATATAATTCCATTCACCATTTTTTAATTCAAACAGTTCTG > NC_000913/4555442‑4555539 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |