| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,555,491 | Δ41,523 bp | [yjiC]–lgoD | 37 genes [yjiC], ytiC, ytiD, idlP, iraD, hypT, iadA, yjiG, yjiH, kptA, yjiJ, yjiK, ytiA, yjiL, yjiM, yjiN, mdtM, rpnD, yjiR, yjiS, yjiT, yjiV, mcrC, mcrB, symE, symR, hsdS, hsdM, hsdR, mrr, yjiA, yjiX, btsT, tsr, lgoT, lgoR, lgoD |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4555491 | 4597013 | 41523 | 176 [0] | [0] 180 | [yjiC]–lgoD | [yjiC],ytiC,ytiD,idlP,iraD,hypT,iadA,yjiG,yjiH,kptA,yjiJ,yjiK,ytiA,yjiL,yjiM,yjiN,mdtM,rpnD,yjiR,yjiS,yjiT,yjiV,mcrC,mcrB,symE,symR,hsdS,hsdM,hsdR,mrr,yjiA,yjiX,btsT,tsr,lgoT,lgoR,lgoD |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4555490 | 0 (0.000) | 172 (1.180) | 78/96 | 0.0 | 100% | coding (831/831 nt) | yjiC | uncharacterized protein YjiC |
| ? | NC_000913 | 4597014 = | 0 (0.000) | intergenic (+2/+136) | lgoD/opgB | L‑galactonate oxidoreductase/phosphoglycerol transferase I | |||||
Only 100 of 180 total aligned reads displayed.
GATGTGATTAACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGCG > NC_000913/4596965‑4597063 | tttagctatctgtataacctgaatgttagtactcattcttcctggtagta < 1:2373614‑M2/1‑1 (MQ=255) tagctatctgtataacctgaatgttagtactcattcttcctggtagtaa < 2:5580855‑M2/2‑1 (MQ=255) tagctatctgtataacctgaatgttagtactcattcttcctggtagtAAg > 2:921363‑M2/48‑50 (MQ=255) tagctatctgtataacctgaatgttagtactcattcttcctggtagtAAg > 2:239410‑M2/48‑50 (MQ=255) tagctatctgtataacctgaatgttagtactcattcttcctggtagtAAg > 1:2929247‑M2/48‑50 (MQ=255) agctatctgtataacctgaatgttagtactcattcttcctggtagtAAgg > 1:4555401‑M2/47‑50 (MQ=255) agctatctgtataacctgaatgttagtactcattcttcctggtagtAAg < 1:4479492‑M2/3‑1 (MQ=255) gctatctgtataacctgaatgttagtactcattcttcctggtagtAAGGc < 1:1708246‑M2/5‑1 (MQ=255) gctatctgtataacctgaatgttagtactcattcttcctggtagtAAGGc < 2:5357428‑M2/5‑1 (MQ=255) ctatctgtataacctgaatgttagtactcattcttcctggtagtAAGGc > 2:4710860‑M2/45‑49 (MQ=255) ctatctgtataacctgaatgttagtactcattcttcctggtagtAAGGCg < 2:2746294‑M2/6‑1 (MQ=255) tatctgtataacctgaatgttagtactcattcttcctggtagtAAGGc > 2:3206605‑M2/44‑48 (MQ=255) tctgtataacctgaatgttagtactcattcttcctggtagtAAGGCga < 2:4836483‑M2/7‑1 (MQ=255) gtataacctgaatgttagtactcattcttcctggtagtAAGGCGAGatta > 1:720618‑M2/39‑50 (MQ=255) tataacctgaatgttagtactcattcttcctggtagtAAGGCgaga < 1:5227045‑M2/9‑1 (MQ=255) tataacctgaatgttagtactcattcttcctggtagtAAGGCGAGattat > 1:4337167‑M2/38‑50 (MQ=255) tataacctgaatgttagtactcattcttcctggtagtAAGGCGAGattat < 1:4093650‑M2/13‑1 (MQ=255) tataacctgaatgttagtactcattcttcctggtagtAAGGCGAGatt < 2:2131551‑M2/11‑1 (MQ=255) tataacctgaatgttagtactcattcttcctggtagtAAGGCGAGatt < 1:3040398‑M2/11‑1 (MQ=255) tataacctgaatgttagtactcattcttcctggtagtAAGGCGAGatt < 1:1988375‑M2/11‑1 (MQ=255) ataacctgaatgttagtactcattcttcctggtagtAAGGCGAGattat > 2:265358‑M2/37‑49 (MQ=255) ataacctgaatgttagtactcattcttcctggtagtAAGGCGAGattat > 1:1375846‑M2/37‑49 (MQ=255) taacctgaatgttagtactcattcttcctggtagtAAGGCGAGattatt < 1:2693114‑M2/14‑1 (MQ=255) taacctgaatgttagtactcattcttcctggtagtAAGGCGAGattatt > 2:2111740‑M2/36‑49 (MQ=255) taacctgaatgttagtactcattcttcctggtagtAAGGCGAGattatt < 1:5382509‑M2/14‑1 (MQ=255) taacctgaatgttagtactcattcttcctggtagtAAGGCGAGAttatta < 2:803363‑M2/15‑1 (MQ=255) acctgaatgttagtactcattcttcctggtagtAAGGCGAGAttatta > 2:2702051‑M2/34‑48 (MQ=255) acctgaatgttagtactcattcttcctggtagtAAGGCGAGAttatta > 1:1049973‑M2/34‑48 (MQ=255) acctgaatgttagtactcattcttcctggtagtAAGGCGAGATTATTaaa < 1:5054015‑M2/17‑1 (MQ=255) acctgaatgttagtactcattcttcctggtagtAAGGCGAGATTATTaa < 1:213435‑M2/16‑1 (MQ=255) cctgaattttagtactcattcttcctggtagtAAGGCGAGATTATTAAAg < 2:3063385‑M2/18‑1 (MQ=255) tgaatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGtt > 1:59210‑M2/31‑50 (MQ=255) aatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGtt < 2:3096828‑M2/20‑1 (MQ=255) aatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTg < 2:34647‑M2/21‑1 (MQ=255) aatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGc < 2:4264405‑M2/22‑1 (MQ=255) aatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGc < 2:1662216‑M2/22‑1 (MQ=255) atgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGc > 2:4994393‑M2/28‑49 (MQ=255) atgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGc > 2:5064799‑M2/28‑49 (MQ=255) tgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCa > 1:3714598‑M2/27‑50 (MQ=255) tgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCa < 1:1405066‑M2/24‑1 (MQ=255) tgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCa < 1:4029613‑M2/24‑1 (MQ=255) ttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCAt < 1:2584773‑M2/25‑1 (MQ=255) ttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCAt < 2:3568630‑M2/25‑1 (MQ=255) ttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATg < 1:3523969‑M2/26‑1 (MQ=255) tagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATg > 1:5531518‑M2/24‑49 (MQ=255) agtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGc < 1:2699945‑M2/27‑1 (MQ=255) gtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCa < 1:3460771‑M2/28‑1 (MQ=255) gtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCa < 1:2922834‑M2/28‑1 (MQ=255) gtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCa < 2:2487429‑M2/28‑1 (MQ=255) gtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCa < 1:4963023‑M2/28‑1 (MQ=255) gtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAg < 2:5092245‑M2/29‑1 (MQ=255) tactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGc > 2:2613420‑M2/21‑50 (MQ=255) actcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCg > 1:3000966‑M2/20‑50 (MQ=255) actcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCg > 2:3848730‑M2/20‑50 (MQ=255) actcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCg > 2:710739‑M2/20‑50 (MQ=255) ctcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCg < 2:2842997‑M2/31‑1 (MQ=255) ctcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGt > 2:5014272‑M2/19‑50 (MQ=255) attcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTcc < 1:3170723‑M2/34‑1 (MQ=255) attcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTcc < 2:2108152‑M2/34‑1 (MQ=255) attcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCg < 1:2392530‑M2/35‑1 (MQ=255) ttcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCgg > 1:4205763‑M2/15‑50 (MQ=255) ttcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCgg < 1:4570839‑M2/36‑1 (MQ=255) ttcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCgg < 2:5165326‑M2/36‑1 (MQ=255) ttcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCgg < 1:557300‑M2/36‑1 (MQ=255) ttcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCgg > 1:1271481‑M2/15‑50 (MQ=255) tcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCggg > 2:5698970‑M2/14‑50 (MQ=255) cttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCggg < 2:4384300‑M2/37‑1 (MQ=255) cttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCggg < 2:2864823‑M2/37‑1 (MQ=255) cttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCggg > 2:1009571‑M2/13‑49 (MQ=255) cttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCggg < 2:1241764‑M2/37‑1 (MQ=255) ttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCgggg > 2:5376343‑M2/12‑49 (MQ=255) tcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCgggg > 1:3596590‑M2/11‑48 (MQ=255) tcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCgggg > 2:5230922‑M2/11‑48 (MQ=255) cctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCgggg < 1:1945933‑M2/38‑1 (MQ=255) cctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGaa < 1:3202569‑M2/40‑1 (MQ=255) cctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGaa < 1:4871384‑M2/40‑1 (MQ=255) cctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGaa < 1:1473040‑M2/40‑1 (MQ=255) ctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAgt < 1:1631294‑M2/42‑1 (MQ=255) ctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAgt > 2:503752‑M2/9‑50 (MQ=255) ctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAgt < 1:3690316‑M2/42‑1 (MQ=255) ctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAgt < 2:1328918‑M2/42‑1 (MQ=255) tggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAgtg > 2:1939116‑M2/8‑50 (MQ=255) ggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAgtgt > 1:117147‑M2/7‑50 (MQ=255) ggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAgtgt > 1:3985304‑M2/7‑50 (MQ=255) ggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAgtgt > 1:3132801‑M2/7‑50 (MQ=255) ggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAgtgt > 1:402344‑M2/7‑50 (MQ=255) gtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGtt < 2:132881‑M2/45‑1 (MQ=255) gtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGtt < 1:1369809‑M2/45‑1 (MQ=255) tagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTg > 2:3675394‑M2/5‑50 (MQ=255) agtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTgg > 2:4171569‑M2/4‑50 (MQ=255) gtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTggg > 1:608271‑M2/3‑50 (MQ=255) gtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTggg > 1:1129138‑M2/3‑50 (MQ=255) gtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTgg < 2:5249196‑M2/47‑1 (MQ=255) gtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTgg < 2:5649730‑M2/47‑1 (MQ=255) tAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGc < 1:1486260‑M2/49‑1 (MQ=255) tAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGc < 1:2049094‑M2/49‑1 (MQ=255) tAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGc < 2:225771‑M2/49‑1 (MQ=255) tAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGc > 1:4827094‑M2/2‑50 (MQ=255) aaGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGgcg > 2:2936066/1‑50 (MQ=255) aaGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGgcg > 1:3402433/1‑50 (MQ=255) | GATGTGATTAACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGCG > NC_000913/4596965‑4597063 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |