| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 508,873 | Δ40,744 bp | copA–[ylbE] | 37 genes copA, copA, copA, glsA, ybaT, cueR, ybbJ, qmcA, fetA, fetB, cnoX, ybbO, tesA, ybbA, ybbP, rhsD, ybbC, ylbH, ybbD, ylbI, ylbG, selU, allS, allA, allR, gcl, hyi, glxR, ybbW, allB, ybbY, glxK, allE, allC, allD, fdrA, [ylbE] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 508873 | 549616 | 40744 | 106 [0] | [0] 102 | copA–[ylbE] | copA,copA,copA,glsA,ybaT,cueR,ybbJ,qmcA,fetA,fetB,cnoX,ybbO,tesA,ybbA,ybbP,rhsD,ybbC,ylbH,ybbD,ylbI,ylbG,selU,allS,allA,allR,gcl,hyi,glxR,ybbW,allB,ybbY,glxK,allE,allC,allD,fdrA,[ylbE] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 508872 | 0 (0.000) | 102 (0.680) | 57/98 | 0.1 | 100% | intergenic (+313/+3) | ybaQ/copA | putative DNA‑binding transcriptional regulator YbaQ/Cu(+) exporting P‑type ATPase |
| ? | NC_000913 | 549617 = | 0 (0.000) | intergenic (+1/‑10) | ylbE/ylbF | DUF1116 domain‑containing protein YlbE/DUF2877 domain‑containing protein YlbF | |||||
Only 100 of 102 total aligned reads displayed.
CTTTGAACAGGCGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTGAGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCG > NC_000913/549568‑549663 | gcgtcgatgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtg > 1:4819945‑M2/50‑50 (MQ=255)gcgacgacgccaaatgcgccaccctaaagcagcgtatccgcaaggatgtg > 2:2078329‑M2/50‑50 (MQ=255) cgtcgatgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtgg < 1:2544045‑M2/2‑1 (MQ=255) cgtcgatgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtg < 2:5399593‑M2/1‑1 (MQ=255) gtcgatgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGa < 2:821992‑M2/3‑1 (MQ=255) gtcgatgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGa < 2:5562567‑M2/3‑1 (MQ=255) tcgatgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGaa < 2:5243439‑M2/4‑1 (MQ=255) cgatgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAAc > 1:2815093‑M2/46‑50 (MQ=255) cgatgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAAc > 1:2440237‑M2/46‑50 (MQ=255) cgatgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAAc > 2:4494812‑M2/46‑50 (MQ=255) cgatgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAAc > 1:2122336‑M2/46‑50 (MQ=255) gatgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAAcg > 1:5590142‑M2/45‑50 (MQ=255) gatgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAAcg > 1:2175644‑M2/45‑50 (MQ=255) gatgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAAcg > 2:4393634‑M2/45‑50 (MQ=255) gatgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAAcg > 1:4971133‑M2/45‑50 (MQ=255) gatgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAAcg < 2:5284541‑M2/6‑1 (MQ=255) gatgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAAc < 2:134989‑M2/5‑1 (MQ=255) atgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAAcgc < 1:1682888‑M2/7‑1 (MQ=255) ccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAACgcgc < 1:1984068‑M2/9‑1 (MQ=255) caaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCaa < 2:1828152‑M2/11‑1 (MQ=255) caaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCaa > 2:4038018‑M2/40‑50 (MQ=255) caaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCaa > 1:3947727‑M2/40‑50 (MQ=255) aaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAAt < 1:2929593‑M2/12‑1 (MQ=255) aaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAAt < 1:2508979‑M2/12‑1 (MQ=255) aatgcgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAAt > 2:2523266‑M2/38‑49 (MQ=255) aatgcgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATg < 1:1594746‑M2/13‑1 (MQ=255) tgcgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGAc < 1:2979547‑M2/15‑1 (MQ=255) tgcgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGAc < 1:2805151‑M2/15‑1 (MQ=255) cgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGa < 2:2327803‑M2/17‑1 (MQ=255) gccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGat > 1:1366280‑M2/33‑50 (MQ=255) gccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGat < 2:4483806‑M2/18‑1 (MQ=255) gccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGat < 1:4314780‑M2/18‑1 (MQ=255) gccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGat < 1:696900‑M2/18‑1 (MQ=255) gccaccctaaagcagcgcaaccgcaatgatgtGGAACGCGCAATGACGat > 2:3045597‑M2/33‑50 (MQ=255) ccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATTACGatc < 1:3099138‑M2/19‑1 (MQ=255) ccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGatc < 2:3783578‑M2/19‑1 (MQ=255) ccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGatc < 1:401525‑M2/19‑1 (MQ=255) accctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGatcat < 1:1531682‑M2/21‑1 (MQ=255) accctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGatcat < 1:3184775‑M2/21‑1 (MQ=255) accctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGatcat < 2:288869‑M2/21‑1 (MQ=255) accctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGatcat < 2:740606‑M2/21‑1 (MQ=255) accctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGatcat > 1:2937232‑M2/30‑50 (MQ=255) ccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGatcatc > 1:4171488‑M2/29‑50 (MQ=255) ccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGatcatc > 2:4565576‑M2/29‑50 (MQ=255) ccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGatcatc < 1:311658‑M2/22‑1 (MQ=255) cctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGatcatc > 2:332508‑M2/28‑49 (MQ=255) ctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGATcatcca < 1:652556‑M2/24‑1 (MQ=255) ctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGATcatcca < 1:1523497‑M2/24‑1 (MQ=255) ctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGATcatcca < 1:1388796‑M2/24‑1 (MQ=255) taaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGATcatccat > 1:4115860‑M2/26‑50 (MQ=255) taaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGATcatccat > 1:1598836‑M2/26‑50 (MQ=255) aaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGATcatccatc > 1:145823‑M2/25‑50 (MQ=255) aagcagcgcatccgcaatgatgtGGAACGCGCAATGACGATCatccatcc > 2:5040433‑M2/24‑50 (MQ=255) aagcagcgcatccgcaatgatgtGGAACGCGCAATGACGATCatccatcc > 1:1287736‑M2/24‑50 (MQ=255) aagcagcgcatccgcaatgatgtGGAACGCGCAATGACGATCatccatcc > 1:2026887‑M2/24‑50 (MQ=255) agcagcgcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCct < 1:4572164‑M2/28‑1 (MQ=255) agcagcgcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCct < 1:2107172‑M2/28‑1 (MQ=255) agcagcgcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCct < 1:2866547‑M2/28‑1 (MQ=255) gcagcgcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCctc < 1:3859722‑M2/29‑1 (MQ=255) cagcgcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCctct > 2:269050‑M2/21‑50 (MQ=255) cagcgcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCctct < 1:3184742‑M2/30‑1 (MQ=255) cagcgcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCctct < 1:4922032‑M2/30‑1 (MQ=255) agcgcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTg < 1:2864163‑M2/31‑1 (MQ=255) gcgcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGc < 1:3077471‑M2/32‑1 (MQ=255) gcgcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGc > 2:356340‑M2/19‑50 (MQ=255) gcgcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGc < 2:62446‑M2/32‑1 (MQ=255) cgcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCt < 1:3101532‑M2/33‑1 (MQ=255) cgcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCt > 2:154711‑M2/18‑50 (MQ=255) cgcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCt > 1:2376616‑M2/18‑50 (MQ=255) cgcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCt > 1:999283‑M2/18‑50 (MQ=255) gcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCtt > 1:935433‑M2/17‑50 (MQ=255) gcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCtt < 1:1936054‑M2/34‑1 (MQ=255) catccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTg > 1:372920‑M2/16‑50 (MQ=255) atccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGc > 1:3094409‑M2/15‑50 (MQ=255) atccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGc > 1:1685232‑M2/15‑50 (MQ=255) atccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGc > 2:313897‑M2/15‑50 (MQ=255) tccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGc > 1:4148923‑M2/14‑49 (MQ=255) cgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCag > 1:1324127‑M2/12‑50 (MQ=255) cgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCa < 2:457627‑M2/38‑1 (MQ=255) cgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCa < 1:312992‑M2/38‑1 (MQ=255) cgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCa < 2:4016528‑M2/38‑1 (MQ=255) caatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCagta < 2:218778‑M2/41‑1 (MQ=255) caatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCagta < 1:1847807‑M2/41‑1 (MQ=255) caatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCag > 2:5368603‑M2/10‑48 (MQ=255) caatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCag > 1:4047878‑M2/10‑48 (MQ=255) aatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCagtag > 1:805745‑M2/9‑50 (MQ=255) atgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCagtagt < 2:422999‑M2/43‑1 (MQ=255) tgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCagtag > 2:87123‑M2/7‑48 (MQ=255) tgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCagtag > 1:1967429‑M2/7‑48 (MQ=255) tgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCagtag > 2:687410‑M2/7‑48 (MQ=255) tgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCagtag > 1:3974948‑M2/7‑48 (MQ=255) tgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAgtagta < 2:2306581‑M2/44‑1 (MQ=255) gatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGtagtag > 1:898401‑M2/6‑50 (MQ=255) gatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGtagtag > 1:4223336‑M2/6‑50 (MQ=255) gatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGtagtag > 2:27209‑M2/6‑50 (MQ=255) atgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGtagtag < 2:2492519‑M2/45‑1 (MQ=255) atgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAgc > 1:5063534‑M2/5‑50 (MQ=255) tgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAgcg < 2:539444‑M2/47‑1 (MQ=255) tgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAgcg < 2:2085202‑M2/47‑1 (MQ=255) gtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAgcg > 1:5535615‑M2/3‑49 (MQ=255) | CTTTGAACAGGCGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTGAGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCG > NC_000913/549568‑549663 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |