| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,165,151 | Δ12,060 bp | yegP–gatY | 17 genes yegP, yegQ, cyaR, ogrK, yegZ, yegR, yegS, gatR, insE‑5, insF‑5, gatR, gatD, gatC, gatB, gatA, gatZ, gatY |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2165151 | 2177210 | 12060 | 200 [0] | [0] 202 | yegP–gatY | yegP,yegQ,cyaR,ogrK,yegZ,yegR,yegS,gatR,insE‑5,insF‑5,gatR,gatD,gatC,gatB,gatA,gatZ,gatY |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2165150 | 0 (0.000) | 199 (1.330) | 83/98 | 0.0 | 100% | intergenic (+152/‑39) | baeR/yegP | DNA‑binding transcriptional activator BaeR/DUF1508 domain‑containing protein YegP |
| ? | NC_000913 | 2177211 = | 0 (0.000) | intergenic (‑7/+301) | gatY/fbaB | tagatose‑1,6‑bisphosphate aldolase 2 subunit GatY/fructose‑bisphosphate aldolase class I | |||||
Only 100 of 200 total aligned reads displayed.
CAGGCATCAGAAAATCGCTCATACTTTAATCGGTAAACAGCACCTTTAGATGCTGTTTTCGATACACAATTTCAATCAAGGAGTCATTATGGCTGGTT > NC_000913/2165101‑2165198 | caggcaTCAGAAAATCGCTCATACTTTAATCGGTAAACAGCACCTTTAGa < 1:5274674/50‑1 (MQ=255) aGGCATCAGAAAATCGCTCATACTTTAATCGGTAAACAGCACCTTTAGAa > 2:4402433‑M1/1‑49 (MQ=255) aGGCATCAGAAAATCGCTCATACTTTAATCGGTAAACAGCACCTTTAGAa < 2:1404988‑M1/50‑2 (MQ=255) aGGCATCAGAAAATCGCTCATACTTTAATCGGTAAACAGCACCTTTAGAa > 2:258933‑M1/1‑49 (MQ=255) gCATCAGAAAATCGCTCATACTTTAATCGGTAAACAGCACCTTTAGAatc < 2:3228921‑M1/50‑4 (MQ=255) gCATCAGAAAATCGCTCATACTTTAATCGGTAAACAGCACCTTTAGAatc < 2:5051032‑M1/50‑4 (MQ=255) cATCAGAAAATCGCTCATACTTTAATCGGTAAACAGCACCTTTAGAatcc > 2:3016601‑M1/1‑46 (MQ=255) cATCAGAAAATCGCTCATACTTTAATCGGTAAACAGCACCTTTAGAatcc > 1:1178796‑M1/1‑46 (MQ=255) cATCAGAAAATCGCTCATACTTTAATCGGTAAACAGCACCTTTAGAatcc < 1:3766968‑M1/50‑5 (MQ=255) aTCAGAAAATCGCTCATACTTTAATCGGTAAACAGCACCTTTAGAatcct > 2:3843218‑M1/1‑45 (MQ=255) tCAGAAAATCGCTCATACTTTAATCGGTAAACAGCACCTTTAGAatcctg < 2:2957855‑M1/50‑7 (MQ=255) aGAAAATCGCTCATACTTTAATCGGTAAACAGCACCTTTAGAatcctgtc < 2:4426543‑M1/50‑9 (MQ=255) aGAAAATCGCTCATACTTTAATCGGTAAACAGCACCTTTAGAatcctgtc > 1:5023978‑M1/1‑42 (MQ=255) aGAAAATCGCTCATACTTTAATCGGTAAACAGCACCTTTAGAatcctgt < 1:4796199‑M1/49‑8 (MQ=255) aGAAAATCGCTCATACTTTAATCGGTAAACAGCACCTTTAGAatcctgt < 2:4925887‑M1/49‑8 (MQ=255) gAAAATCGCTCATACTTTAATCGGTAAACAGCACCTTTAGAatcctgtcg < 2:476538‑M1/50‑10 (MQ=255) aaaTCGCTCATACTTTAATCGGTAAACAGCACCTTTAGAatcctgtcgtt < 1:3444832‑M1/50‑12 (MQ=255) aaaTCGCTCATACTTTAATCGGTAAACAGCACCTTTAGAatcctgtcgtt > 2:578690‑M1/1‑39 (MQ=255) aaTCGCTCATACTTTAATCGGTAAACAGCACCTTTAGAatcctgtcgttt < 1:467607‑M1/50‑13 (MQ=255) aaTCGCTCATACTTTAATCGGTAAACAGCACCTTTAGAatcctgtcgttt > 2:4133615‑M1/1‑38 (MQ=255) aaTCGCTCATACTTTAATCGGTAAACAGCACCTTTAGAatcctgtcgttt < 1:5670091‑M1/50‑13 (MQ=255) aaTCGCTCATACTTTAATCGGTAAACAGCACCTTTAGAatcctgtcgttt < 2:2890323‑M1/50‑13 (MQ=255) gCTCATACTTTAATCGGTAAACAGCACCTTTAGAatcctgtcgtttgtt < 2:3255996‑M1/49‑16 (MQ=255) cTCATACTTTAATCGGTAAACAGCACCTTTAGAatcctgtcgtttgtttt < 1:1004704‑M1/50‑18 (MQ=255) cTCATACTTTAATCGGTAAACAGCACCTTTAGAatcctgtcgtttgtttt < 1:1624726‑M1/50‑18 (MQ=255) cTCATACTTTAATCGGTAAACAGCACCTTTAGAatcctgtcgtttgtttt < 1:2448339‑M1/50‑18 (MQ=255) tCATACTTTAATCGGTAAACAGCACCTTTAGAatcctgtcgtttgttttc > 2:2398928‑M1/1‑32 (MQ=255) tCATACTTTAATCGGTAAACAGCACCTTTAGAatcctgtcgtttgttttc > 2:2342734‑M1/1‑32 (MQ=255) cATACTTTAATCGGTAAACAGCACCTTTAGAatcctgtcgtttgttttc > 2:254126‑M1/1‑31 (MQ=255) aTACTTTAATCGGTAAACAGCACCTTTAGAatcctgtcgtttgttttcga < 2:2179517‑M1/50‑21 (MQ=255) aTACTTTAATCGGTAAACAGCACCTTTAGAatcctgtcgtttgttttcg < 1:218312‑M1/49‑20 (MQ=255) tACTTTAATCGGTAAACAGCACCTTTAGAatcctgtcgtttgttttcgat < 1:3237114‑M1/50‑22 (MQ=255) tACTTTAATCGGTAAACAGCACCTTTAGAatcctgtcgtttgttttcgat < 1:994944‑M1/50‑22 (MQ=255) tACTTTAATCGGTAAACAGCACCTTTAGAatcctgtcgtttgttttcgat > 1:3856295‑M1/1‑29 (MQ=255) cTTTAATCGGTAAACAGCACCTTTAGAatcctgtcgtttgttttcgattt > 2:5068204‑M1/1‑27 (MQ=255) cTTTAATCGGTAAACAGCACCTTTAGAatcctgtcgtttgttttcgattt < 1:4478002‑M1/50‑24 (MQ=255) cTTTAATCGGTAAACAGCACCTTTAGAatcctgtcgtttgttttcgattt < 2:1130041‑M1/50‑24 (MQ=255) cTTTAATCGGTAAACAGCACCTTTAGAatcctgtcgtttgttttcgattt < 2:2050625‑M1/50‑24 (MQ=255) ttAATCGGTAAACAGCACCTTTAGAatcctgtcgtttgttttcgatttc > 1:4659885‑M1/1‑25 (MQ=255) tAATCGGTAAACAGCACCTTTAGAatcctgtcgtttgttttcgatttca > 1:3298334‑M1/1‑24 (MQ=255) tAATCGGTAAACAGCACCTTTAGAatcctgtcgtttgttttcgatttc < 1:5496243‑M1/48‑25 (MQ=255) tAATCGGTAAACAGCACCTTTAGAatcctgtcgtttgttttcgatttc < 1:5632708‑M1/48‑25 (MQ=255) tAATCGGTAAACAGCACCTTTAGAatcctgtcgtttgttttcgatttc < 1:3026356‑M1/48‑25 (MQ=255) aaTCGGTAAACAGCACCTTTAGAatcctgtcgtttgttttcgatttcaa < 2:2090969‑M1/49‑27 (MQ=255) aaTCGGTAAACAGCACCTTTAGAatcctgtcgtttgttttcgatttcaa > 1:3346507‑M1/1‑23 (MQ=255) aTCGGTAAACAGCACCTTTAGAatcctgtcgtttgttttcgatttcaaaa < 2:2923339‑M1/50‑29 (MQ=255) aTCGGTAAACAGCACCTTTAGAatcctgtcgtttgttttcgatttcaaaa < 1:719359‑M1/50‑29 (MQ=255) aTCGGTAAACAGCACCTTTAGAatcctgtcgtttgttttcgatttcaaaa < 1:1866907‑M1/50‑29 (MQ=255) aTCGGTAAACAGCACCTTTAGAatcctgtcgtttgttttcgatttcaaaa > 2:131043‑M1/1‑22 (MQ=255) aTCGGTAAACAGCACCTTTAGAatcctgtcgtttgttttcgatttcaaaa < 2:192094‑M1/50‑29 (MQ=255) aTCGGTAAACAGCACCTTTAGAatcctgtcgtttgttttcgatttcaaaa < 1:4450410‑M1/50‑29 (MQ=255) tCGGTAAACAGCCCCTTTAGAatcctgtcgtttgttttcgatttcaaaat < 2:4591102‑M1/50‑30 (MQ=255) tCGGTAAACAGCACCTTTAGAatcctgtcgtttgttttcgatttcaaaa > 1:959421‑M1/1‑21 (MQ=255) ggTAAACAGCACCTTTAGAatcctgtcgtttgttttcgatttcaaaatat < 2:277777‑M1/50‑32 (MQ=255) ggTAAACAGCACCTTTAGAatcctgtcgtttgttttcgatttcaaaata < 2:3935447‑M1/49‑31 (MQ=255) ggTAAACAGCACCTTTAGAatcctgtcgtttgttttcgatttcaaaata < 1:1057101‑M1/49‑31 (MQ=255) ggTAAACAGCACCTTTAGAatcctgtcgtttgttttcgatttcaaaata > 1:2375483‑M1/1‑19 (MQ=255) gTAAACAGCACCTTTAGAatcctgtcgtttgttttcgatttcaaaatata < 2:3794043‑M1/50‑33 (MQ=255) gTAAACAGCACCTTTAGAatcctgtcgtttgttttcgatttcaaaatata < 1:1534197‑M1/50‑33 (MQ=255) gTAAACAGCACCTTTAGAatcctgtcgtttgttttcgatttcaaaatata < 1:3197504‑M1/50‑33 (MQ=255) gTAAACAGCACCTTTAGAatcctgtcgtttgttttcgatttcaaaatat > 1:1401834‑M1/1‑18 (MQ=255) gTAAACAGCACCTTTAGAatcctgtcgtttgttttcgatttcaaaacat > 1:4567326‑M1/1‑18 (MQ=255) tAAACAGCACCTTTAGAatcctgtcgtttgttttcgatttcaaaatataa < 1:4865618‑M1/50‑34 (MQ=255) tAAACAGCACCTTTAGAatcctgtcgtttgttttcgatttcaaaatataa < 1:1211004‑M1/50‑34 (MQ=255) aaaCAGCACCTTTAGAatcctgtcgtttgttttcgatttcaaaatataat > 2:4663461‑M1/1‑16 (MQ=255) aaaCAGCACCTTTAGAatcctgtcgtttgttttcgatttcaaaatataat > 1:5539283‑M1/1‑16 (MQ=255) aaCAGCACCTTTAGAatcctgtcgtttgttttcgatttcaaaatataatg < 2:4823796‑M1/50‑36 (MQ=255) aCAGCACCTTTAGAatcctgtcgtttgttttcgatttcaaaatataatga < 2:1706114‑M1/50‑37 (MQ=255) aCAGCACCTTTAGAatcctgtcgtttgttttcgatttcaaaatataatg > 1:1985861‑M1/1‑14 (MQ=255) cAGCACCTTTAGAatcctgtcgtttgttttcgatttcaaaatataatgaa < 2:2188249‑M1/50‑38 (MQ=255) cAGCACCTTTAGAatcctgtcgtttgttttcgatttcaaaatataatgaa < 2:1990037‑M1/50‑38 (MQ=255) cAGCACCTTTAGAatcctgtcgtttgttttcgatttcaaaatataatga > 2:2140050‑M1/1‑13 (MQ=255) aGCACCTTTAGAatcctgtcgtttgttttcgatttcaaaatataatgaaa > 2:4618352‑M1/1‑12 (MQ=255) gCACCTTTAGAatcctgtcgtttgttttcgatttcaaaatataatgaaat < 1:2300182‑M1/50‑40 (MQ=255) cACCTTTAGAatcctgtcgtttgttttcgatttcaaaatataatgaaatt < 1:774538‑M1/50‑41 (MQ=255) cACCTTTAGAatcctgtcgtttgttttcgatttcaaaatataatgaaatt < 1:1317570‑M1/50‑41 (MQ=255) aCCTTTAGAatcctgtcgtttgttttcgatttcaaaatataatgaaatta > 2:2280869‑M1/1‑9 (MQ=255) aCCTTTAGAatcctgtcgtttgttttcgatttcaaaatataatgaaatta > 1:2804141‑M1/1‑9 (MQ=255) ccTTTAGAatcctgtcgtttgttttcgatttcaaaatataatgaaattat < 1:1023744‑M1/50‑43 (MQ=255) ccTTTAGAatcctgtcgtttgttttcgatttcaaaatataatgaaattat < 2:1508999‑M1/50‑43 (MQ=255) ccTTTAGAatcctgtcgtttgttttcgatttcaaaatataatgaaattat > 1:1376333‑M1/1‑8 (MQ=255) ccTTTAGAatcctgtcgtttgttttcgatttcaaaatataatgaaattat < 1:3928703‑M1/50‑43 (MQ=255) cTTTAGAatcctgtcgtttgttttcgatttcaaaatataatgaaattatt > 2:904970‑M1/1‑7 (MQ=255) cTTTAGAatcctgtcgtttgttttcgatttcaaaatataatgaaattatt > 1:2903317‑M1/1‑7 (MQ=255) tttAGAatcctgtcgtttgttttcgatttcaaaatataatgaaattattt > 1:2988794‑M1/1‑6 (MQ=255) tttAGAatcctgtcgtttgttttcgatttcaaaatataatgaaattattt > 1:2847315‑M1/1‑6 (MQ=255) ttAGAatcctgtcgtatgttttcgatttcaaaatataatgaaattatttg > 2:432691‑M1/1‑5 (MQ=255) tAGAatcctgtcgtttgttttcgatttcaaaatataatgaaattatttgt > 1:2774661‑M1/1‑4 (MQ=255) tAGAatcctgtcgtttgttttcgatttcaaaatataatgaaattatttg < 1:3159644‑M1/49‑46 (MQ=255) tAGAatcctgtcgtttgttttcgatttcaaaatataatgaaattatttg < 1:2734631‑M1/49‑46 (MQ=255) tAGAatcctgtcgtttgttttcgatttcaaaatataatgaaattattt < 1:261732‑M1/48‑45 (MQ=255) tAGAatcctgtcgtttgttttcgatttcaaaatataatgaaattattt < 1:2117174‑M1/48‑45 (MQ=255) aGAatcctgtcgtttgttttcgatttcaaaatataatgaaattatttgt < 1:3649530‑M1/49‑47 (MQ=255) aGAatcctgtcgtttgttttcgatttcaaaatataatgaaattatttgt < 1:2557984‑M1/49‑47 (MQ=255) gAatcctgtcgtttgttttcgatttcaaaatataatgaaattatttgttt < 2:5376706‑M1/50‑49 (MQ=255) gAatcctgtcgtttgttttcgatttcaaaatataatgaaattatttgttt > 2:3076425‑M1/1‑2 (MQ=255) gAatcctgtcgtttgttttcgatttcaaaatataatgaaattatttgtt < 1:4080457‑M1/49‑48 (MQ=255) gAatcctgtcgtttgttttcgatttcaaaatataatgaaattatttgtt < 2:5279971‑M1/49‑48 (MQ=255) gAatcctgtcgtttgttttcgatttcaaaatataatgaaattatttgtt < 2:5535883‑M1/49‑48 (MQ=255) gAatcctgtcgtttgttttcgatttcaaaatataatgaaattatttgtt < 1:860954‑M1/49‑48 (MQ=255) | CAGGCATCAGAAAATCGCTCATACTTTAATCGGTAAACAGCACCTTTAGATGCTGTTTTCGATACACAATTTCAATCAAGGAGTCATTATGGCTGGTT > NC_000913/2165101‑2165198 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |