| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,466,545 | Δ9,634 bp | [intS]–[ypdJ] | 15 genes [intS], yfdG, yfdH, yfdI, yfdK, yfdL, yfdM, yfdN, yfdO, yfdP, yfdQ, yfdR, yfdS, [yfdT], [ypdJ] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2466545 | 2476178 | 9634 | 195 [0] | [0] 196 | [intS]–[ypdJ] | [intS],yfdG,yfdH,yfdI,yfdK,yfdL,yfdM,yfdN,yfdO,yfdP,yfdQ,yfdR,yfdS,[yfdT],[ypdJ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2466544 | 0 (0.000) | 190 (1.270) | 83/98 | 0.0 | 100% | intergenic (+161/‑1) | argW/intS | tRNA‑Arg/CPS‑53 (KpLE1) prophage; prophage CPS‑53 integrase |
| ? | NC_000913 | 2476179 = | 0 (0.000) | coding (86/141 nt) | ypdJ | CPS‑53 (KpLE1) prophage; putative uncharacterized protein YpdJ | |||||
Only 100 of 195 total aligned reads displayed.
ATGACGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCATGCTCACCGTTAAGCAGATTGAAGCAGCAAAGCCGAAAGAAAAACCAT > NC_000913/2466495‑2466593 | aTGACGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTAccc > 1:3699661/1‑50 (MQ=255) aCGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTAccc > 1:2899536/1‑47 (MQ=255) cGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtaga < 1:3446114‑M1/50‑5 (MQ=255) cGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCta > 2:4544849‑M1/1‑46 (MQ=255) gggTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagag < 2:466644‑M1/50‑6 (MQ=255) gggTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagag < 2:1931097‑M1/50‑6 (MQ=255) ggTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagc > 1:313396‑M1/1‑44 (MQ=255) ggTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagc > 2:277332‑M1/1‑44 (MQ=255) gTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagcc < 1:4127270‑M1/50‑8 (MQ=255) gTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagc > 2:343733‑M1/1‑43 (MQ=255) tAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagcca < 2:3269602‑M1/50‑9 (MQ=255) tAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagcca > 2:5301744‑M1/1‑42 (MQ=255) aaaaaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagcca > 2:1508802‑M1/1‑41 (MQ=255) aaaaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccata > 2:3203820‑M1/1‑40 (MQ=255) aaaaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccat < 1:764453‑M1/49‑10 (MQ=255) aaaaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccat < 1:842358‑M1/49‑10 (MQ=255) aaaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccatac < 1:2544733‑M1/50‑12 (MQ=255) aaaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccata > 1:658856‑M1/1‑39 (MQ=255) aaaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccata > 1:1997529‑M1/1‑39 (MQ=255) aaaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccata > 2:4924047‑M1/1‑39 (MQ=255) aaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccataca < 2:1388696‑M1/50‑13 (MQ=255) aaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccataca < 2:2202305‑M1/50‑13 (MQ=255) attggATAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacag > 1:2458573‑M1/3‑37 (MQ=255) aGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacag > 2:1701093‑M1/1‑37 (MQ=255) gTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagc > 1:4861817‑M1/1‑36 (MQ=255) tGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagcc > 2:929883‑M1/1‑35 (MQ=255) tGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagcc < 2:757207‑M1/50‑16 (MQ=255) ggATAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagcct > 1:4959441‑M1/1‑34 (MQ=255) gATAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagcctc < 2:5101312‑M1/50‑18 (MQ=255) gATAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagcct > 2:4291246‑M1/1‑33 (MQ=255) gATAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagcct > 2:4038879‑M1/1‑33 (MQ=255) aTAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagcctca < 2:1361219‑M1/50‑19 (MQ=255) aTAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagcctca < 1:5050917‑M1/50‑19 (MQ=255) aTAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagcctca > 1:110004‑M1/1‑32 (MQ=255) tAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagcctcac < 1:2656064‑M1/50‑20 (MQ=255) tAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagcctca > 2:2894738‑M1/1‑31 (MQ=255) tAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagcctca > 1:2610537‑M1/1‑31 (MQ=255) aaaaTAATTTTACCCACCGGATTTTTACCCtagagccatacagcctcact > 1:4293954‑M1/1‑30 (MQ=255) aaaaTAATTTTACCCACCGGATTTTTACCCtagagccatacagcctcaca > 1:1895408‑M1/1‑30 (MQ=255) aaaaTAATTTTACCCACCGGATTTTTACCCtagagccatacagcctcaca > 2:100079‑M1/1‑30 (MQ=255) aaaTAATTTTACCCACCGGATTTTTACCCtagagccatacagcctcacac < 1:5592224‑M1/50‑22 (MQ=255) aataatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacact > 2:3952269‑M1/1‑28 (MQ=255) aataatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacact < 2:5232872‑M1/50‑23 (MQ=255) aataatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacact < 2:1486168‑M1/50‑23 (MQ=255) ataatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactc > 2:229988‑M1/1‑27 (MQ=255) ataatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactc > 1:2759170‑M1/1‑27 (MQ=255) ataatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactc < 2:145624‑M1/50‑24 (MQ=255) ataatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactc > 1:4083746‑M1/1‑27 (MQ=255) ataatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactc < 2:1112372‑M1/50‑24 (MQ=255) ataatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactc < 1:3247563‑M1/50‑24 (MQ=255) taatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactc > 2:3087245‑M1/1‑26 (MQ=255) agttttacCCACCGGATTTTTACCCtagagccatactgcctcacactcga > 2:3483464‑M1/3‑25 (MQ=255) aatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactcga > 1:4672010‑M1/1‑25 (MQ=255) aatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactcga > 1:507020‑M1/1‑25 (MQ=255) atTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactcgat > 2:69563‑M1/1‑24 (MQ=255) atTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactcgat > 2:4692468‑M1/1‑24 (MQ=255) atTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactcgat > 1:3413493‑M1/1‑24 (MQ=255) atTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactcgat > 2:1098667‑M1/1‑24 (MQ=255) atTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactcga < 2:4746687‑M1/49‑26 (MQ=255) atTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactcga < 2:3651540‑M1/49‑26 (MQ=255) ttttACCCACCGGATTTTTACCCtagagccatacagcctcacactcgatg < 2:4211554‑M1/50‑28 (MQ=255) ttttACCCACCGGATTTTTACCCtagagccatacagcctcacactcgat > 1:2866270‑M1/1‑23 (MQ=255) tttACCCACCGGATTTTTACCCtagagccatacagcctcacactcgat > 1:2033601‑M1/1‑22 (MQ=255) tttACCCACCGGATTTTTACCCtagagccatacagcctcacactcgat > 2:5044463‑M1/1‑22 (MQ=255) ttACCCACCGGATTTTTACCCtagagccatacagcctcacactcgatgag > 2:4641647‑M1/1‑21 (MQ=255) ttACCCACCGGATTTTTACCCtagagccatacagcctcacactcgatgag > 2:2071538‑M1/1‑21 (MQ=255) ttACCCACCGGATTTTTACCCtagagccatacagcctcacactcgatga < 1:2196118‑M1/49‑29 (MQ=255) tACCCACCGGATTTTTACCCtagagccatacagcctcacactcgatgagg > 1:661215‑M1/1‑20 (MQ=255) aCCCACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggc > 1:120361‑M1/1‑19 (MQ=255) aCCCACCGGATTTTTACCCtagagccatacagcctcacactcgatgagg < 1:5569696‑M1/49‑31 (MQ=255) cccACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggc < 2:2162291‑M1/49‑32 (MQ=255) ccACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcct > 1:5123407‑M1/1‑17 (MQ=255) ccACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcct < 2:2329587‑M1/50‑34 (MQ=255) aCCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcctgt > 1:4177652‑M1/1‑15 (MQ=255) cGGATTTTTACCCtagagccatacagcctcacactcgatgaggcctgtca < 2:1849080‑M1/50‑38 (MQ=255) cGGATTTTTACCCtagagccatacagcctcacactcgatgaggcctgtca < 1:2426356‑M1/50‑38 (MQ=255) cGGATTTTTACCCtagagccatacagcctcacactcgatgaggcctgt > 2:1280347‑M1/1‑13 (MQ=255) cGGATTTTTACCCtagagccatacagcctcacactcgatgaggcctgt > 1:1492603‑M1/1‑13 (MQ=255) ggATTTTTACCCtagagccatacagcctcacactcgatgaggcctgtcag > 2:612324‑M1/1‑12 (MQ=255) ggATTTTTACCCtagagccatacagcctcacactcgatgaggcctgtcag > 2:54720‑M1/1‑12 (MQ=255) ggATTTTTACCCtagagccatacagcctcacactcgatgaggcctgtcag > 2:4835015‑M1/1‑12 (MQ=255) ggATTTTTACCCtagagccatacagcctcacactcgatgaggcctgtcag < 1:1053458‑M1/50‑39 (MQ=255) aTTTTTACCCtagagccatacagcctcacactcgatgaggcctgtcagtt > 2:852192‑M1/1‑10 (MQ=255) aTTTTTACCCtagagccatacagcctcacactcgatgaggcctgtcagtt > 2:5580914‑M1/1‑10 (MQ=255) ttttACCCtagatccatacagcctcacactcgttgaggcctgtcagtttc > 2:312632‑M1/1‑8 (MQ=255) ttttACCCtagagccatacagcctcacactcgatgaggcctgtcagtttc > 1:164377‑M1/1‑8 (MQ=255) ttttACCCtagagccatacagcctcacactcgatgaggcctgtcagtttc > 2:3871749‑M1/1‑8 (MQ=255) tttACCCtagagccatacagcctcacactcgatgaggcctgtcagtttc < 2:4095082‑M1/49‑43 (MQ=255) ttACCCtagagccatacagcctcacactcgatgaggcctgtcagtttct > 2:3798613‑M1/1‑6 (MQ=255) ttACCCtagagccatacagcctcacactcgatgaggcctgtcagtttct < 1:3608953‑M1/49‑44 (MQ=255) ttACCCtagagccatacagcctcacactcgatgaggcctgtcagtttct > 1:991365‑M1/1‑6 (MQ=255) ttACCCtagagccatacagcctcacactcgatgaggcctgtcagtttct < 1:3197636‑M1/49‑44 (MQ=255) aCCCtagagccatacagcctcacactcgatgaggcctgtcagtttctta < 1:1628013‑M1/49‑46 (MQ=255) aCCCtagagccatacagcctcacactcgatgaggcctgtcagtttctta > 1:5336356‑M1/1‑4 (MQ=255) ccctagagccatacagcctcacactcgatgaggcctgtcagtttcttaaa < 2:5134337‑M1/50‑48 (MQ=255) cctagagccatacagcctcacactcgatgaggcctgtcagtttcttaaaa < 2:2524173‑M1/50‑49 (MQ=255) cctagagccatacagcctcacactcgatgaggcctgtcagtttcttaaaa > 2:654345‑M1/1‑2 (MQ=255) cctagagccatacagcctcacactcgatgaggcctgtcagtttcttaaaa < 2:282724‑M1/50‑49 (MQ=255) cctagagccatacagcctcacactcgatgaggcctgtcagtttcttaaaa < 1:2091606‑M1/50‑49 (MQ=255) ctagagccatacagcctcacactcgatgaggcctgtcagtttcttaaaat < 1:403533‑M1/50‑50 (MQ=255) | ATGACGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCATGCTCACCGTTAAGCAGATTGAAGCAGCAAAGCCGAAAGAAAAACCAT > NC_000913/2466495‑2466593 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |