| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,466,545 | Δ9,634 bp | [intS]–[ypdJ] | 15 genes [intS], yfdG, yfdH, yfdI, yfdK, yfdL, yfdM, yfdN, yfdO, yfdP, yfdQ, yfdR, yfdS, [yfdT], [ypdJ] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2466545 | 2476178 | 9634 | 195 [0] | [0] 196 | [intS]–[ypdJ] | [intS],yfdG,yfdH,yfdI,yfdK,yfdL,yfdM,yfdN,yfdO,yfdP,yfdQ,yfdR,yfdS,[yfdT],[ypdJ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2466544 | 0 (0.000) | 190 (1.270) | 83/98 | 0.0 | 100% | intergenic (+161/‑1) | argW/intS | tRNA‑Arg/CPS‑53 (KpLE1) prophage; prophage CPS‑53 integrase |
| ? | NC_000913 | 2476179 = | 0 (0.000) | coding (86/141 nt) | ypdJ | CPS‑53 (KpLE1) prophage; putative uncharacterized protein YpdJ | |||||
Only 100 of 196 total aligned reads displayed.
ACGAGCTGGTATCCATTTTTCAACAATGTCACAACAAGAGGTGAAATAATAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTAAAATA > NC_000913/2476130‑2476228 | tgacgggtaaaaagtggataaaataattttacccaccggatttttaccct < 1:5053933‑M2/1‑1 (MQ=255) acgggtaaaaagtggataaaataattttacccaccggatttttacccTa < 2:4715356‑M2/2‑1 (MQ=255) cgggtaaaaagtggataaaataattttacccaccggatttttacccTaga < 1:5085932‑M2/4‑1 (MQ=255) cgggtaaaaagtggataaaataattttacccaccggatttttacccTa > 2:4544849‑M2/47‑48 (MQ=255) gggtaaaaagtggataaaataattttacccaccggatttttacccTagag < 2:1931097‑M2/5‑1 (MQ=255) ggtaaaaagtggataaaataattttacccaccggatttttacccTAGAGc > 1:313396‑M2/45‑50 (MQ=255) ggtaaaaagtggataaaataattttacccaccggatttttacccTAGAGc > 2:277332‑M2/45‑50 (MQ=255) gtaaaaagtggataaaataattttacccaccggatttttacccTAGAGc > 2:4845857‑M2/44‑49 (MQ=255) gtaaaaagtggataaaataattttacccaccggatttttacccTAGAGc > 2:343733‑M2/44‑49 (MQ=255) gtaaaaagtggataaaataattttacccaccggatttttacccTAGAGc > 2:3991430‑M2/44‑49 (MQ=255) taaaaagtggataaaataattttacccaccggatttttacccTAGAGCCa < 2:3269602‑M2/8‑1 (MQ=255) taaaaagtggataaaataattttacccaccggatttttacccTAGAGCCa > 1:4807518‑M2/43‑50 (MQ=255) taaaaagtggataaaataattttacccaccggatttttacccTAGAGCCa > 2:5301744‑M2/43‑50 (MQ=255) aaaaagtggataaaataattttacccaccggatttttacccTAGAGCCa > 2:1508802‑M2/42‑49 (MQ=255) aaaagtggataaaataattttacccaccggatttttacccTAGAGCCAt < 1:764453‑M2/9‑1 (MQ=255) aaaagtggataaaataattttacccaccggatttttacccTAGAGCCAt < 1:842358‑M2/9‑1 (MQ=255) aaaagtggataaaataattttacccaccggatttttacccTAGAGCCATa < 1:2504378‑M2/10‑1 (MQ=255) aagtggataaaataattttacccaccggatttttacccTAGAGCCATACa < 1:2123741‑M2/12‑1 (MQ=255) aagtggataaaataattttacccaccggatttttacccTAGAGCCATACa < 2:2202305‑M2/12‑1 (MQ=255) aagtggataaaataattttacccaccggatttttacccTAGAGCCATACa < 2:1388696‑M2/12‑1 (MQ=255) agtggataaaataattttacccaccggatttttacccTAGAGCCATACAg > 1:2870537‑M2/38‑50 (MQ=255) agtggataaaataattttacccaccggatttttacccTAGAGCCATACAg > 2:1701093‑M2/38‑50 (MQ=255) tggataaaataattttacccaccggatttttacccTAGAGCCATACAGcc > 2:929883‑M2/36‑50 (MQ=255) tggataaaataattttacccaccggatttttacccTAGAGCCATACAGcc < 2:757207‑M2/15‑1 (MQ=255) gataaaataattttacccaccggatttttacccTAGAGCCATACAGCCt > 2:4291246‑M2/34‑49 (MQ=255) gataaaataattttacccaccggatttttacccTAGAGCCATACAGCCt > 2:4038879‑M2/34‑49 (MQ=255) gataaaataattttacccaccggatttttacccTAGAGCCATACAGCCTc < 2:5101312‑M2/17‑1 (MQ=255) gataaaataattttacccaccggatttttacccTAGAGCCATACAGCCTc < 2:386897‑M2/17‑1 (MQ=255) ataaaataattttacccaccggatttttacccTAGAGCCATACAGCCTca < 2:1361219‑M2/18‑1 (MQ=255) ataaaataattttacccaccggatttttacccTAGAGCCATACAGCCTca > 1:110004‑M2/33‑50 (MQ=255) taaaataattttacccaccggatttttacccTAGAGCCATACAGCCTca > 2:2894738‑M2/32‑49 (MQ=255) taaaataattttacccaccggatttttacccTAGAGCCATACAGCCTca > 1:361233‑M2/32‑49 (MQ=255) aaaataattttacccaccggatttttacccTAGAGCCATACAGCCTcaca > 1:1895408‑M2/31‑50 (MQ=255) aaaataattttacccaccggatttttacccTAGAGCCATACAGCCTcaca > 1:2008589‑M2/31‑50 (MQ=255) aaaataattttacccaccggatttttacccTAGAGCCATACAGCCTcaca > 2:100079‑M2/31‑50 (MQ=255) aaataattttacccaccggatttttacccTAGAGCCATACAGCCTCacac < 1:526656‑M2/21‑1 (MQ=255) aataattttacccaccggatttttacccTAGAGCCATACAGCCTCACACt < 2:1486168‑M2/22‑1 (MQ=255) aataattttacccaccggatttttacccTAGAGCCATACAGCCTCACACt < 2:5232872‑M2/22‑1 (MQ=255) aataattttacccaccggatttttacccTAGAGCCATACAGCCTCACACt < 2:4752171‑M2/22‑1 (MQ=255) ataattttacccaccggatttttacccTAGAGCCATACAGCCTCACACTc > 1:4083746‑M2/28‑50 (MQ=255) ataattttacccaccggatttttacccTAGAGCCATACAGCCTCACACTc < 1:3429221‑M2/23‑1 (MQ=255) ataattttacccaccggatttttacccTAGAGCCATACAGCCTCACACTc < 2:1112372‑M2/23‑1 (MQ=255) ataattttacccaccggatttttacccTAGAGCCATACAGCCTCACACTc > 1:2565206‑M2/28‑50 (MQ=255) ataattttacccaccggatttttacccTAGAGCCATACAGCCTCACACTc > 2:229988‑M2/28‑50 (MQ=255) ataattttacccaccggatttttacccTAGAGCCATACAGCCTCACACTc < 1:2444426‑M2/23‑1 (MQ=255) taattttacccaccggatttttacccTAGAGCCATACAGCCTCACACTc > 2:3087245‑M2/27‑49 (MQ=255) agttttacccaccggatttttacccTAGAGCCATACTGCCTCACACTCGa > 2:3483464‑M2/26‑50 (MQ=255) attttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGa < 2:3651540‑M2/25‑1 (MQ=255) attttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGAt > 2:1098667‑M2/25‑50 (MQ=255) attttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGAt > 2:69563‑M2/25‑50 (MQ=255) attttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGAt < 1:2853664‑M2/26‑1 (MQ=255) ttttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGAt > 1:5462503‑M2/24‑49 (MQ=255) ttttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATg < 2:4211554‑M2/27‑1 (MQ=255) ttttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATg < 1:5041194‑M2/27‑1 (MQ=255) ttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGa < 2:4645542‑M2/28‑1 (MQ=255) ttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAg > 2:2071538‑M2/22‑50 (MQ=255) ttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAg > 1:4229193‑M2/22‑50 (MQ=255) tacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAgg > 1:661215‑M2/21‑50 (MQ=255) tacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAgg > 2:3212409‑M2/21‑50 (MQ=255) tacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAg < 2:1467195‑M2/29‑1 (MQ=255) acccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGc > 2:5012957‑M2/20‑50 (MQ=255) acccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGc > 2:3916714‑M2/20‑50 (MQ=255) acccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGc > 1:120361‑M2/20‑50 (MQ=255) cccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGcc > 1:3546394‑M2/19‑50 (MQ=255) cccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGc < 2:2162291‑M2/31‑1 (MQ=255) ccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCt < 2:2329587‑M2/33‑1 (MQ=255) accggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGt < 1:2047894‑M2/35‑1 (MQ=255) accggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGt < 2:4673890‑M2/35‑1 (MQ=255) ccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTc < 1:4500096‑M2/36‑1 (MQ=255) cggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGt > 2:5072784‑M2/14‑48 (MQ=255) cggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGt > 1:1492603‑M2/14‑48 (MQ=255) cggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGt > 2:1280347‑M2/14‑48 (MQ=255) cggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGt > 1:2235975‑M2/14‑48 (MQ=255) cggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCa < 2:1849080‑M2/37‑1 (MQ=255) cggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCa < 1:5585662‑M2/37‑1 (MQ=255) ggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAg > 2:54720‑M2/13‑50 (MQ=255) ggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAg > 2:612324‑M2/13‑50 (MQ=255) ggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAg < 1:1053458‑M2/38‑1 (MQ=255) gatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGt > 1:414787‑M2/12‑50 (MQ=255) atttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGtt > 2:852192‑M2/11‑50 (MQ=255) atttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGtt > 2:5580914‑M2/11‑50 (MQ=255) ttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTc > 1:164377‑M2/9‑50 (MQ=255) tttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTc < 2:4095082‑M2/42‑1 (MQ=255) tttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCt > 1:4104655‑M2/8‑50 (MQ=255) ttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCt > 2:3166474‑M2/7‑49 (MQ=255) ttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCt < 1:3197636‑M2/43‑1 (MQ=255) ttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCt > 1:991365‑M2/7‑49 (MQ=255) tacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCtt < 1:4941737‑M2/44‑1 (MQ=255) acccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTa < 1:271724‑M2/45‑1 (MQ=255) acccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTa < 1:1628013‑M2/45‑1 (MQ=255) cccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTaaa < 2:5134337‑M2/47‑1 (MQ=255) ccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTaaaa < 2:2524173‑M2/48‑1 (MQ=255) ccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTaaaa > 2:654345‑M2/3‑50 (MQ=255) ccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTaaaa < 2:282724‑M2/48‑1 (MQ=255) ccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTaaaa < 1:2649897‑M2/48‑1 (MQ=255) cTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTaaaa > 1:3351804‑M2/2‑49 (MQ=255) cTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTAAAAt < 1:403533‑M2/49‑1 (MQ=255) taGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTAAAata > 2:1440550/1‑50 (MQ=255) taGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTAAAata > 1:572743/1‑50 (MQ=255) taGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTAAAata > 2:3125594/1‑50 (MQ=255) | ACGAGCTGGTATCCATTTTTCAACAATGTCACAACAAGAGGTGAAATAATAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTAAAATA > NC_000913/2476130‑2476228 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |