| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 167,484 | Δ5,964 bp | [fhuA]–fhuB | [fhuA], fhuC, fhuD, fhuB | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 167484 | 173447 | 5964 | 29 [0] | [0] 29 | [fhuA]–fhuB | [fhuA],fhuC,fhuD,fhuB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 167483 | 0 (0.000) | 27 (0.900) | 23/98 | 0.1 | 100% | intergenic (+219/‑1) | mrcB/fhuA | peptidoglycan glycosyltransferase/peptidoglycan DD‑transpeptidase MrcB/ferrichrome outer membrane transporter/phage receptor |
| ? | NC_000913 | 173448 = | 0 (0.000) | intergenic (+4/+154) | fhuB/hemL | iron(III) hydroxamate ABC transporter membrane subunit/glutamate‑1‑semialdehyde aminotransferase | |||||
TCATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/167438‑167483‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCCATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACG > NC_000913/173448‑173492 TCATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCATTC > 1:602813/1‑49 CATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCATTCCA > 1:1965786/1‑50 TTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCATTCCATA > 1:1920772/1‑50 GTTTACGTTATCATTCACTTTACATCAGAGATATACCATTCCATATAACG > 1:2034387/1‑50 GTTTACGTTATCATTCACTTTACATCAGAGATATACCATTCCATATAAC < 1:1830658/49‑1 GTTTACGTTATCATTCACTTTACATCAGAGATATACCATTCCATATA < 1:676686/47‑1 GTTTACGTTATCATTCACTTTACATCAGAGATATACCATTCCATATA < 1:1230760/47‑1 TTTACGTTATCATTCACTTTACATCAGAGATATACCATTCCATATAACGG > 1:1456448/1‑50 TTTACGTTATCATTCACTTTACATCAGAGATATACCATTCCATATAACGG > 1:1959950/1‑50 TACGTTATCATTCACTTTACATCAGAGATATACCATTCCATATAACGGC < 1:625345/49‑1 ACGTTATCATTCACTTTACATCAGAGATATACCATTCCATATAACGGCCC > 1:2201642/1‑50 TTATCATTCACTTTACATCAGAGATATACCATTCCATATAACGGCCCTG > 1:540361/1‑49 TATCATTCACTTTACATCAGAGATATACCATTCCATATAACGGCCCTGTA > 1:897479/1‑50 TCATTCACTTTACATCAGAGATATACCATTCCATATAACGGCCCTGTAC < 1:1831087/49‑1 TCATTCACTTTACATCAGAGATATACCATTCCATATAACGGCCCTGTAC < 1:1362911/49‑1 TTCACTTTACATCAGAGATATACCATTCCATATAACGGCCCTGTACGCCT > 1:1705883/1‑50 TTCACTTTACATCAGAGATATACCATTCCATATAACGGCCCTGTACGCCT < 1:1500503/50‑1 TACATCAGAGATATACCATTCCATATAACGGCCCTGTACGCCTGGACGGA > 1:704119/1‑50 ACATCAGAGATATACCATTCCATATAACGGCCCTGTACGCCTGGACGGA > 1:288724/1‑49 ATCAGAGATATACCATTCCATATAACGGCCCTGTACGCCTGGACGGATAA < 1:2094072/50‑1 AGAGATATACCATTCCATATAACGGCCCTGTACGCCTGGACGGATAAAGC < 1:1812992/50‑1 AGAGATATACCATTCCATATAACGGCCCTGTACGCCTGGACGGATAAAGC > 1:1149498/1‑50 AGAGATATACCATTCCATATAACGGCCCTGTACGCCTGGACGGATAAAG < 1:2121491/49‑1 GAGATATACCATTCCATATAACGGCCCTGTACGCCTGGACGGATAAAGCG > 1:1449230/1‑50 GAGATATACCATTCCATATAACGGCCCTGTACGCCTGGACGGATAAAGCG > 1:1130813/1‑50 ATATACCATTCCATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTT > 1:668100/1‑49 TACCATTCCATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACG > 1:395912/1‑50 TCATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/167438‑167483‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCCATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACG > NC_000913/173448‑173492 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |