| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 263,514 | Δ61,897 bp | [ykfI]–ykgH | 71 genes [ykfI], yafW, ykfH, ykfG, yafX, ykfF, ykfB, yafY, yafZ, ykfA, perR, insN, insI‑1, insN, eyeA, ykfC, insH‑1, mmuP, mmuM, afuC, afuB, insB‑2, insA‑2, yagB, yagA, yagE, yagF, yagG, yagH, xynR, argF, ykgS, insB‑3, insA‑3, yagJ, yagK, yagL, yagM, ykgV, yagN, intF, yagP, paoD, paoC, paoB, paoA, yagU, ykgJ, ecpE, ecpD, ecpC, ecpB, ecpA, ecpR, ykgL, ykgO, ykgM, ykgR, ykgP, eaeH, insE‑1, insF‑1, ykgA, rclC, rclB, rclA, rclR, ykgE, ykgF, ykgG, ykgH |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 263514 | 325410 | 61897 | 39 [0] | [0] 39 | [ykfI]–ykgH | [ykfI],yafW,ykfH,ykfG,yafX,ykfF,ykfB,yafY,yafZ,ykfA,perR,insN,insI‑1,insN,eyeA,ykfC,insH‑1,mmuP,mmuM,afuC,afuB,insB‑2,insA‑2,yagB,yagA,yagE,yagF,yagG,yagH,xynR,argF,ykgS,insB‑3,insA‑3,yagJ,yagK,yagL,yagM,ykgV,yagN,intF,yagP,paoD,paoC,paoB,paoA,yagU,ykgJ,ecpE,ecpD,ecpC,ecpB,ecpA,ecpR,ykgL,ykgO,ykgM,ykgR,ykgP,eaeH,insE‑1,insF‑1,ykgA,rclC,rclB,rclA,rclR,ykgE,ykgF,ykgG,ykgH |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 263513 | 0 (0.000) | 36 (1.250) | 29/94 | 0.0 | 100% | coding (157/342 nt) | ykfI | CP4‑6 prophage; toxin of the YkfI‑YafW toxin‑antitoxin system |
| ? | NC_000913 | 325411 = | 0 (0.000) | intergenic (‑47/+166) | ykgH/betA | uncharacterized protein YkgH/choline dehydrogenase | |||||
TTTTTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/263463‑263513‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCAT > NC_000913/325411‑325458 TTTTTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGA > 1:834288/1‑50TTTTTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGA > 1:1391893/1‑50 TTTTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGA > 1:1309338/1‑49 TACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCT > 1:1499566/1‑50 AAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCA < 1:378889/50‑1 AAAATGCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCA < 1:2251606/50‑1 AAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAG < 1:528036/50‑1 AATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGG < 1:1551237/50‑1 ATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGA < 1:1705137/50‑1 CACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAAT < 1:1010676/49‑1 ACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGT < 1:1488461/50‑1 CATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGG > 1:2141406/1‑50 ATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGG < 1:335221/50‑1 ATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGCTCGGG > 1:837932/1‑50 GGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTA < 1:1761866/50‑1 GGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTA < 1:747313/50‑1 GGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTT > 1:1945838/1‑49 GGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTT < 1:2018284/49‑1 GCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTA > 1:856562/1‑49 TAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAA > 1:1124261/1‑49 TAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAA > 1:1326053/1‑49 AGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATA > 1:255126/1‑50 GGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATA < 1:382993/49‑1 GGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATAT > 1:950204/1‑49 GTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCA < 1:2129736/50‑1 GTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCA < 1:569072/50‑1 GTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATAT > 1:2207607/1‑48 GTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATAT > 1:2181898/1‑48 ACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAA > 1:1198541/1‑49 CCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAA < 1:2191617/50‑1 CCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAA < 1:388333/49‑1 CCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAA < 1:738596/49‑1 CCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAA > 1:1663240/1‑49 GCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGC > 1:1640276/1‑50 ATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCC > 1:38683/1‑50 ATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCC > 1:1660595/1‑50 ATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCC < 1:101400/50‑1 CGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCG > 1:33662/1‑49 GATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGC < 1:358875/49‑1 ATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCAT < 1:644522/50‑1 ATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCAT > 1:923304/1‑50 TAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCAT > 1:2220846/1‑49 TTTTTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/263463‑263513‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCAT > NC_000913/325411‑325458 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |