| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 263,514 | Δ61,897 bp | [ykfI]–ykgH | 71 genes [ykfI], yafW, ykfH, ykfG, yafX, ykfF, ykfB, yafY, yafZ, ykfA, perR, insN, insI‑1, insN, eyeA, ykfC, insH‑1, mmuP, mmuM, afuC, afuB, insB‑2, insA‑2, yagB, yagA, yagE, yagF, yagG, yagH, xynR, argF, ykgS, insB‑3, insA‑3, yagJ, yagK, yagL, yagM, ykgV, yagN, intF, yagP, paoD, paoC, paoB, paoA, yagU, ykgJ, ecpE, ecpD, ecpC, ecpB, ecpA, ecpR, ykgL, ykgO, ykgM, ykgR, ykgP, eaeH, insE‑1, insF‑1, ykgA, rclC, rclB, rclA, rclR, ykgE, ykgF, ykgG, ykgH |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 263514 | 325410 | 61897 | 39 [0] | [0] 39 | [ykfI]–ykgH | [ykfI],yafW,ykfH,ykfG,yafX,ykfF,ykfB,yafY,yafZ,ykfA,perR,insN,insI‑1,insN,eyeA,ykfC,insH‑1,mmuP,mmuM,afuC,afuB,insB‑2,insA‑2,yagB,yagA,yagE,yagF,yagG,yagH,xynR,argF,ykgS,insB‑3,insA‑3,yagJ,yagK,yagL,yagM,ykgV,yagN,intF,yagP,paoD,paoC,paoB,paoA,yagU,ykgJ,ecpE,ecpD,ecpC,ecpB,ecpA,ecpR,ykgL,ykgO,ykgM,ykgR,ykgP,eaeH,insE‑1,insF‑1,ykgA,rclC,rclB,rclA,rclR,ykgE,ykgF,ykgG,ykgH |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 263513 | 0 (0.000) | 36 (1.250) | 29/94 | 0.0 | 100% | coding (157/342 nt) | ykfI | CP4‑6 prophage; toxin of the YkfI‑YafW toxin‑antitoxin system |
| ? | NC_000913 | 325411 = | 0 (0.000) | intergenic (‑47/+166) | ykgH/betA | uncharacterized protein YkgH/choline dehydrogenase | |||||
TACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATGTGTTCCTTAATCACAGCCTCATTGCAGAATGGCGTGTCGTTTATTGT > NC_000913/263469‑263561 | tACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtct > 1:1499566‑M1/1‑45 (MQ=255) aaaaTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatca < 1:378889‑M1/50‑12 (MQ=255) aaaaTGCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatca < 1:2251606‑M1/50‑12 (MQ=255) aaaTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcag < 1:528036‑M1/50‑13 (MQ=255) aaTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcagg < 1:1551237‑M1/50‑14 (MQ=255) aTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcagga < 1:1705137‑M1/50‑15 (MQ=255) cACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaat < 1:1010676‑M1/49‑17 (MQ=255) aCGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgt < 1:1488461‑M1/50‑19 (MQ=255) cATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgg > 1:2141406‑M1/1‑28 (MQ=255) aTCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcggg < 1:335221‑M1/50‑24 (MQ=255) aTCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgctcggg > 1:837932‑M1/1‑27 (MQ=255) ggCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggtta < 1:1761866‑M1/50‑27 (MQ=255) ggCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggtta < 1:747313‑M1/50‑27 (MQ=255) ggCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggtt > 1:1945838‑M1/1‑24 (MQ=255) ggCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggtt < 1:2018284‑M1/49‑26 (MQ=255) gCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggtta > 1:856562‑M1/1‑23 (MQ=255) tAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaa > 1:1326053‑M1/1‑21 (MQ=255) tAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaa > 1:1124261‑M1/1‑21 (MQ=255) aGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaata > 1:255126‑M1/1‑20 (MQ=255) gggTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaata < 1:382993‑M1/49‑31 (MQ=255) ggTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatat > 1:950204‑M1/1‑18 (MQ=255) gTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatatca < 1:2129736‑M1/50‑34 (MQ=255) gTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatatca < 1:569072‑M1/50‑34 (MQ=255) gTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatat > 1:2207607‑M1/1‑17 (MQ=255) gTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatat > 1:2181898‑M1/1‑17 (MQ=255) aCCGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaa > 1:1198541‑M1/1‑12 (MQ=255) ccGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaa < 1:2191617‑M1/50‑40 (MQ=255) ccGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaa < 1:388333‑M1/49‑39 (MQ=255) ccGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaa > 1:1663240‑M1/1‑11 (MQ=255) ccGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaa < 1:738596‑M1/49‑39 (MQ=255) gCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagc > 1:1640276‑M1/1‑8 (MQ=255) aTCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagccc > 1:38683‑M1/1‑6 (MQ=255) aTCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagccc > 1:1660595‑M1/1‑6 (MQ=255) aTCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagccc < 1:101400‑M1/50‑45 (MQ=255) cGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccg > 1:33662‑M1/1‑4 (MQ=255) gATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccgc < 1:358875‑M1/49‑47 (MQ=255) aTagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccgcat < 1:644522‑M1/50‑49 (MQ=255) aTagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccgcat > 1:923304‑M1/1‑2 (MQ=255) tagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccgcat > 1:2220846‑M1/1‑1 (MQ=255) | TACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATGTGTTCCTTAATCACAGCCTCATTGCAGAATGGCGTGTCGTTTATTGT > NC_000913/263469‑263561 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |