Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,040,502 Δ73,763 bp [appX]–[mdtG] 75 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1040502 1114264 73763 34 [0] [0] 33 [appX]–[mdtG] [appX],appA,etk,etp,gfcE,gfcD,gfcC,gfcB,gfcA,insA‑4,insB‑4,cspH,cspG,ymcF,ymcE,gnsA,yccM,torS,torT,torR,torC,torA,torD,cbpM,cbpA,yccE,agp,yccJ,wrbA,ymdF,rutG,rutF,rutE,rutD,rutC,rutB,rutA,rutR,putA,ymdG,putP,efeU,efeO,efeB,phoH,pgaD,pgaC,pgaB,pgaA,dgcT,insF‑4,insE‑4,ymdE,ycdU,serX,ghrA,ycdX,ycdY,ycdZ,csgG,csgF,csgE,csgD,csgB,csgA,csgC,ymdA,ymdB,clsC,opgC,opgG,opgH,yceK,msyB,[mdtG]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 10405010 (0.000)32 (1.090) 29/96 0.0 100% coding (57/93 nt) appX small protein AppX
?NC_000913 1114265 = 0 (0.000)coding (1226/1227 nt) mdtG efflux pump MdtG

TTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1040453‑1040501
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGA  >  NC_000913/1114265‑1114311
                                                                                                
TTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT                                                 <  1:898721/49‑1
TTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT                                                 >  1:2083295/1‑49
       TGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGA                                         >  1:1452146/1‑50
       TGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCG                                          <  1:278374/49‑1
       TGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCG                                          <  1:794179/49‑1
       TGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTC                                           <  1:2148004/48‑1
        GGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGA                                         >  1:546696/1‑49
         GTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGAT                                        <  1:2214844/49‑1
          TTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATAC                                      <  1:1423329/50‑1
           TCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACC                                     >  1:1878045/1‑50
             GTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCT                                    <  1:1070910/49‑1
             GTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCT                                    <  1:215511/49‑1
              TCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGG                                  >  1:1194574/1‑50
               CGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGG                                 >  1:943642/1‑50
                GGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGG                                >  1:2110456/1‑50
                GGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGG                                 <  1:1639865/49‑1
                 GCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGT                               <  1:471011/50‑1
                      TTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTC                           <  1:424290/49‑1
                       TGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCG                          <  1:469051/49‑1
                        GTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGA                         <  1:484739/49‑1
                            ATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGAC                     >  1:1797662/1‑49
                             TGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGA                   >  1:2066697/1‑50
                                GTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACG                 >  1:1436633/1‑49
                                 TTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTA               <  1:1619715/50‑1
                                    GCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGAC            <  1:954902/50‑1
                                    GCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGA             <  1:1333132/49‑1
                                     CTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACT           >  1:1960196/1‑50
                                     CTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACT           <  1:1931053/50‑1
                                     CTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACT           >  1:1112636/1‑50
                                      TCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTG          >  1:1579141/1‑50
                                       CTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGT         >  1:379524/1‑50
                                          CACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTC       >  1:669339/1‑49
                                           ACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCA     <  1:2000809/50‑1
                                              CTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGA  <  1:893222/50‑1
                                                                                                
TTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1040453‑1040501
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGA  >  NC_000913/1114265‑1114311

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.