BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	1,040,502	Δ73,763 bp		[appX]–[mdtG]	75 genes [appX], appA, etk, etp, gfcE, gfcD, gfcC, gfcB, gfcA, insA‑4, insB‑4, cspH, cspG, ymcF, ymcE, gnsA, yccM, torS, torT, torR, torC, torA, torD, cbpM, cbpA, yccE, agp, yccJ, wrbA, ymdF, rutG, rutF, rutE, rutD, rutC, rutB, rutA, rutR, putA, ymdG, putP, efeU, efeO, efeB, phoH, pgaD, pgaC, pgaB, pgaA, dgcT, insF‑4, insE‑4, ymdE, ycdU, serX, ghrA, ycdX, ycdY, ycdZ, csgG, csgF, csgE, csgD, csgB, csgA, csgC, ymdA, ymdB, clsC, opgC, opgG, opgH, yceK, msyB, [mdtG]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	1040502	1114264	73763	34 [0]	[0] 33	[appX]–[mdtG]	[appX],appA,etk,etp,gfcE,gfcD,gfcC,gfcB,gfcA,insA‑4,insB‑4,cspH,cspG,ymcF,ymcE,gnsA,yccM,torS,torT,torR,torC,torA,torD,cbpM,cbpA,yccE,agp,yccJ,wrbA,ymdF,rutG,rutF,rutE,rutD,rutC,rutB,rutA,rutR,putA,ymdG,putP,efeU,efeO,efeB,phoH,pgaD,pgaC,pgaB,pgaA,dgcT,insF‑4,insE‑4,ymdE,ycdU,serX,ghrA,ycdX,ycdY,ycdZ,csgG,csgF,csgE,csgD,csgB,csgA,csgC,ymdA,ymdB,clsC,opgC,opgG,opgH,yceK,msyB,[mdtG]

ATAGCTGATTCTCCGCTTTTGCAAGTATGAAAGGCGAAAAATCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGAA  >  NC_000913/1114223‑1114312

tggttcgtcggcattttgttgatgtgttcgctctccacccttCAGTTc                                            <  1:2148004‑M2/6‑1 (MQ=255)

tggttcgtcggcattttgttgatgtgttcgctctccacccttCAGTTCg                                           <  1:278374‑M2/7‑1 (MQ=255)

tggttcgtcggcattttgttgatgtgttcgctctccacccttCAGTTCg                                           <  1:794179‑M2/7‑1 (MQ=255)

tggttcgtcggcattttgttgatgtgttcgctctccacccttCAGTTCGa                                          >  1:1452146‑M2/43‑50 (MQ=255)

 ggttcgtcggcattttgttgatgtgttcgctctccacccttCAGTTCGa                                          >  1:546696‑M2/42‑49 (MQ=255)

  gttcgtcggcattttgttgatgtgttcgctctccacccttCAGTTCGAt                                         <  1:2214844‑M2/9‑1 (MQ=255)

   ttcgtcggcattttgttgatgtgttcgctctccacccttCAGTTCGATAc                                       <  1:1423329‑M2/11‑1 (MQ=255)

    tcgtcggcattttgttgatgtgttcgctctccacccttCAGTTCGATAcc                                      >  1:1878045‑M2/39‑50 (MQ=255)

      gtcggcattttgttgatgtgttcgctctccacccttCAGTTCGATACCt                                     <  1:1070910‑M2/13‑1 (MQ=255)

      gtcggcattttgttgatgtgttcgctctccacccttCAGTTCGATACCt                                     <  1:215511‑M2/13‑1 (MQ=255)

       tcggcattttgttgatgtgttcgctctccacccttCAGTTCGATACCTgg                                   >  1:1194574‑M2/36‑50 (MQ=255)

        cggcattttgttgatgtgttcgctctccacccttCAGTTCGATACCTggg                                  >  1:943642‑M2/35‑50 (MQ=255)

         ggcattttgttgatgtgttcgctctccacccttCAGTTCGATACCTgggg                                 >  1:2110456‑M2/34‑50 (MQ=255)

         ggcattttgttgatgtgttcgctctccacccttCAGTTCGATACCTggg                                  <  1:1639865‑M2/16‑1 (MQ=255)

          gcattttgttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGt                                <  1:471011‑M2/18‑1 (MQ=255)

               ttgttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTc                            <  1:424290‑M2/22‑1 (MQ=255)

                tgttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTcg                           <  1:469051‑M2/23‑1 (MQ=255)

                 gttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTcga                          <  1:484739‑M2/24‑1 (MQ=255)

                     atgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTcgacgac                      >  1:1797662‑M2/22‑49 (MQ=255)

                      tgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTcgacgacga                    >  1:2066697‑M2/21‑50 (MQ=255)

                         gttcgctctccacccttCAGTTCGATACCTGGGGTATTCGacgacgacg                  >  1:1436633‑M2/18‑49 (MQ=255)

                          ttcgctctccacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTa                <  1:1619715‑M2/34‑1 (MQ=255)

                             gctctccacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGa              <  1:1333132‑M2/36‑1 (MQ=255)

                             gctctccacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGAc             <  1:954902‑M2/37‑1 (MQ=255)

                              ctctccacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACt            >  1:1960196‑M2/13‑50 (MQ=255)

                              ctctccacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACt            <  1:1931053‑M2/38‑1 (MQ=255)

                              ctctccacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACt            >  1:1112636‑M2/13‑50 (MQ=255)

                               tctccacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTg           >  1:1579141‑M2/12‑50 (MQ=255)

                                ctccacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGt          >  1:379524‑M2/11‑50 (MQ=255)

                                   cacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTc        >  1:669339‑M2/8‑49 (MQ=255)

                                    acccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCa      <  1:2000809‑M2/44‑1 (MQ=255)

                                       cttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGa   <  1:893222‑M2/47‑1 (MQ=255)

                                          cAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGaa  <  1:1164014/48‑1 (MQ=255)

ATAGCTGATTCTCCGCTTTTGCAAGTATGAAAGGCGAAAAATCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGAA  >  NC_000913/1114223‑1114312

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`