Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,997,112 Δ26,567 bp [tcyN]–[fliR] 32 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1997112 2023678 26567 30 [0] [0] 31 [tcyN]–[fliR] [tcyN],tcyL,dcyD,tcyJ,fliZ,fliA,fliC,fliD,fliS,fliT,amyA,yedD,yedE,yedF,yedK,yedL,yedN,intG,fliE,fliF,fliG,fliH,fliI,fliJ,fliK,fliL,fliM,fliN,fliO,fliP,fliQ,[fliR]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 19971110 (0.000)30 (1.000) 20/98 0.2 100% coding (704/753 nt) tcyN cystine ABC transporter ATP binding subunit
?NC_000913 2023679 = 0 (0.000)intergenic (+1/‑289) fliR/rcsA flagellar biosynthesis protein FliR/DNA‑binding transcriptional activator RcsA

TATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1997063‑1997111
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAAT  >  NC_000913/2023679‑2023725
                                                                                                
TATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGGGCGAGGCTGCTCGGT                                                >  1:1384124/1‑50
  TTGCAGCAGGAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTC                                              <  1:850977/50‑1
         AGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGGTTCGTAACG                                       >  1:1993315/1‑50
            AACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGgt                                     >  1:945693/1‑47
               TTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTtt                                  >  1:579251/1‑47
                    GAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTT                            <  1:1689367/50‑1
                    GAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCAT                               <  1:931268/47‑1
                     AGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTA                           <  1:117881/50‑1
                     AGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTA                           <  1:1327553/50‑1
                     AGGAACTGGCGGGTGCGAGGCTGCTCGGGTTCGTAACGTTTATCATGTTA                           >  1:221337/1‑50
                           TGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCT                       >  1:1362130/1‑48
                            GGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAG                    >  1:807753/1‑50
                             GCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGG                   <  1:1548501/50‑1
                             GCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGG                   <  1:493083/50‑1
                             GCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAA                     <  1:1117424/48‑1
                             GCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATATTATCCTAAGG                   <  1:1055235/50‑1
                              CGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGA                  <  1:699333/50‑1
                               GGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGAT                 >  1:223279/1‑50
                                GGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATT                <  1:1820654/50‑1
                                GGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATT                <  1:1714846/50‑1
                                GGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATT                <  1:127227/50‑1
                                GGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATT                <  1:1212585/50‑1
                                GGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATT                <  1:1085673/50‑1
                                   GCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATC             >  1:2114887/1‑50
                                    CGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCC            <  1:1956780/50‑1
                                       GGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGA          >  1:2103046/1‑49
                                        GCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAA        <  1:1590382/50‑1
                                               GGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAAT  <  1:1880255/49‑1
                                               GGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAA   <  1:1299560/48‑1
                                               GGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAA   <  1:11401/48‑1
                                                                                                
TATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1997063‑1997111
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAAT  >  NC_000913/2023679‑2023725

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.