| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,184,782 | Δ6,916 bp | ubiK–yqiI | ubiK, ygiL, yqiG, insC‑5, insD‑5, yqiG, yqiH, yqiI | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3184782 | 3191697 | 6916 | 39 [0] | [0] 40 | ubiK–yqiI | ubiK,ygiL,yqiG,insC‑5,insD‑5,yqiG,yqiH,yqiI |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3184781 | 0 (0.000) | 39 (1.330) | 33/96 | 0.0 | 100% | intergenic (‑315/‑59) | ribB/ubiK | 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/ubiquinone biosynthesis accessory factor UbiK |
| ? | NC_000913 | 3191698 = | 0 (0.000) | intergenic (+2/+41) | yqiI/glgS | putative fimbrial protein YqiI/surface composition regulator | |||||
CTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATGACTTACCCTTATCGCACTACAATGGCACTCAACACCTATCAGTACAG > NC_000913/3184734‑3184829 | cTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATat > 1:1718913‑M1/1‑48 (MQ=255) aaTGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatc > 1:1628261‑M1/1‑46 (MQ=255) aTGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatct < 1:2008091‑M1/49‑5 (MQ=255) aTGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatct < 1:1838219‑M1/49‑5 (MQ=255) gATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaa > 1:1121672‑M1/1‑43 (MQ=255) tAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaatac > 1:237152‑M1/1‑40 (MQ=255) aGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaataca > 1:980777‑M1/1‑39 (MQ=255) gCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaa < 1:1534754‑M1/50‑13 (MQ=255) gCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaa < 1:552010‑M1/50‑13 (MQ=255) gCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaatacaa < 1:1125873‑M1/49‑12 (MQ=255) ggCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaaca > 1:1471579‑M1/1‑36 (MQ=255) ggCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaaca > 1:1637136‑M1/1‑36 (MQ=255) agcaACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacacta < 1:1291129‑M1/50‑18 (MQ=255) agcaACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacact > 1:930258‑M1/1‑33 (MQ=255) gcaACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaa < 1:1543587‑M1/50‑19 (MQ=255) gcaACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacacta > 1:880281‑M1/1‑32 (MQ=255) caACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaa < 1:1464193‑M1/50‑20 (MQ=255) caACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaa > 1:1536063‑M1/1‑31 (MQ=255) aCGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaac < 1:1981648‑M1/50‑22 (MQ=255) aCGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaac < 1:1275984‑M1/50‑22 (MQ=255) gCATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaacgg < 1:88764‑M1/50‑24 (MQ=255) aTAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaacgggc < 1:902438‑M1/50‑26 (MQ=255) tAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaacgggcc < 1:342519‑M1/50‑27 (MQ=255) cTTCACATAATTCTGGTTTATatctaatacaaacactaaaacgggccat > 1:493377‑M1/1‑21 (MQ=255) tCACATAATTCTGGTTTATatctaatacaaacactaaaacgggccatcag > 1:762512‑M1/1‑19 (MQ=255) cacaTAATTCTGGTTTATatctaatacaaacactaaaacgggccatcagg > 1:756501‑M1/1‑18 (MQ=255) acaTAATTCTGGTTTATatctaatacaaacactaaaacgggccatcaggc > 1:1893456‑M1/1‑17 (MQ=255) caTAATTCTGGTTTATatctaatacaaacactaaaacgggccatcaggcc > 1:1652040‑M1/1‑16 (MQ=255) aTAATTCTGGTTTATatctaatacaaacactaaaacgggccatcaggccc > 1:1783939‑M1/1‑15 (MQ=255) tAATTCTGGTTTATatctaatacaaacactaaaacgggccatcaggcccg > 1:78272‑M1/1‑14 (MQ=255) aTTCTGGTTTATatctaatacaaacactaaaacgggccatcaggcccgt > 1:1188145‑M1/1‑12 (MQ=255) ggTTTATatctaatacaaacactaaaacgggccatcaggcccgttatat > 1:1033665‑M1/1‑7 (MQ=255) gTTTATatctaatacaaacactaaaacgggccatcaggcccgttatatc < 1:1503307‑M1/49‑44 (MQ=255) gTTTATatctaatacaaacactaaaacgggccatcaggcccgttatat > 1:262903‑M1/1‑6 (MQ=255) gTTTATatctaatacaaacactaaaacgggccatcaggcccgttata < 1:491423‑M1/47‑42 (MQ=255) gTTTATatctaatacaaacactaaaacgggccatcaggcccgttata < 1:214954‑M1/47‑42 (MQ=255) ttATatctaatacaaacactaaaacgggccatcaggcccgttatatcagt > 1:2255668‑M1/1‑4 (MQ=255) atatctaatacaaacactaaaacgggccatcaggcccgttatatcagtgc > 1:793924‑M1/1‑2 (MQ=255) atatctaatacaaacactaaaacgggccatcaggcccgttatatcagtgc > 1:270886‑M1/1‑2 (MQ=255) | CTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATGACTTACCCTTATCGCACTACAATGGCACTCAACACCTATCAGTACAG > NC_000913/3184734‑3184829 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |