| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,184,782 | Δ6,916 bp | ubiK–yqiI | ubiK, ygiL, yqiG, insC‑5, insD‑5, yqiG, yqiH, yqiI | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3184782 | 3191697 | 6916 | 39 [0] | [0] 40 | ubiK–yqiI | ubiK,ygiL,yqiG,insC‑5,insD‑5,yqiG,yqiH,yqiI |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3184781 | 0 (0.000) | 39 (1.330) | 33/96 | 0.0 | 100% | intergenic (‑315/‑59) | ribB/ubiK | 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/ubiquinone biosynthesis accessory factor UbiK |
| ? | NC_000913 | 3191698 = | 0 (0.000) | intergenic (+2/+41) | yqiI/glgS | putative fimbrial protein YqiI/surface composition regulator | |||||
AGGGACCGTTTAGTAAAGACGTAATCCTGAAAATCACCTATAACTAGTATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTGCTC > NC_000913/3191650‑3191747 | ctaatgattagcggcagcaacgcatagcttcacataattctggtttatat > 1:1718913‑M2/49‑50 (MQ=255) aatgattagcggcagcaacgcatagcttcacataattctggtttatATc > 1:1628261‑M2/47‑49 (MQ=255) atgattagcggcagcaacgcatagcttcacataattctggtttatATCt < 1:1838219‑M2/4‑1 (MQ=255) atgattagcggcagcaacgcatagcttcacataattctggtttatATCt < 1:2008091‑M2/4‑1 (MQ=255) gattagcggcagcaacgcatagcttcacataattctggtttatATCTaa > 1:1121672‑M2/44‑49 (MQ=255) tagcggcagcaacgcatagcttcacataattctggtttatATCTAATAc > 1:237152‑M2/41‑49 (MQ=255) agcggcagcaacgcatagcttcacataattctggtttatATCTAATACa > 1:980777‑M2/40‑49 (MQ=255) gcggcagcaacgcatagcttcacataattctggtttatATCTAATACaaa < 1:552010‑M2/12‑1 (MQ=255) gcggcagcaacgcatagcttcacataattctggtttatATCTAATACaaa < 1:1534754‑M2/12‑1 (MQ=255) gcggcagcaacgcatagcttcacataattctggtttatATCTAATACaa < 1:1125873‑M2/11‑1 (MQ=255) ggcagcaacgcatagcttcacataattctggtttatATCTAATACAAaca > 1:1471579‑M2/37‑50 (MQ=255) ggcagcaacgcatagcttcacataattctggtttatATCTAATACAAaca > 1:1637136‑M2/37‑50 (MQ=255) agcaacgcatagcttcacataattctggtttatATCTAATACAAACACt > 1:930258‑M2/34‑49 (MQ=255) agcaacgcatagcttcacataattctggtttatATCTAATACAAACACTa < 1:1291129‑M2/17‑1 (MQ=255) gcaacgcatagcttcacataattctggtttatATCTAATACAAACACTaa < 1:1543587‑M2/18‑1 (MQ=255) gcaacgcatagcttcacataattctggtttatATCTAATACAAACACTa > 1:880281‑M2/33‑49 (MQ=255) caacgcatagcttcacataattctggtttatATCTAATACAAACACTaaa < 1:1464193‑M2/19‑1 (MQ=255) caacgcatagcttcacataattctggtttatATCTAATACAAACACTaa > 1:1536063‑M2/32‑49 (MQ=255) acgcatagcttcacataattctggtttatATCTAATACAAACACTAAAAc < 1:1981648‑M2/21‑1 (MQ=255) acgcatagcttcacataattctggtttatATCTAATACAAACACTAAAAc < 1:1275984‑M2/21‑1 (MQ=255) gcatagcttcacataattctggtttatATCTAATACAAACACTAAAACgg < 1:88764‑M2/23‑1 (MQ=255) atagcttcacataattctggtttatATCTAATACAAACACTAAAACGGGc < 1:902438‑M2/25‑1 (MQ=255) tagcttcacataattctggtttatATCTAATACAAACACTAAAACGGGcc < 1:342519‑M2/26‑1 (MQ=255) cttcacataattctggtttatATCTAATACAAACACTAAAACGGGCCAt > 1:493377‑M2/22‑49 (MQ=255) tcacataattctggtttatATCTAATACAAACACTAAAACGGGCCATCAg > 1:762512‑M2/20‑50 (MQ=255) cacataattctggtttatATCTAATACAAACACTAAAACGGGCCATCAgg > 1:756501‑M2/19‑50 (MQ=255) acataattctggtttatATCTAATACAAACACTAAAACGGGCCATCAGGc > 1:1893456‑M2/18‑50 (MQ=255) cataattctggtttatATCTAATACAAACACTAAAACGGGCCATCAGGcc > 1:1652040‑M2/17‑50 (MQ=255) ataattctggtttatATCTAATACAAACACTAAAACGGGCCATCAGGccc > 1:1783939‑M2/16‑50 (MQ=255) taattctggtttatATCTAATACAAACACTAAAACGGGCCATCAGGCCCg > 1:78272‑M2/15‑50 (MQ=255) attctggtttatATCTAATACAAACACTAAAACGGGCCATCAGGCCCGt > 1:1188145‑M2/13‑49 (MQ=255) ggtttatATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTatat > 1:1033665‑M2/8‑49 (MQ=255) gtttatATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTtata < 1:491423‑M2/41‑1 (MQ=255) gtttatATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTtata < 1:214954‑M2/41‑1 (MQ=255) gtttatATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTatat > 1:262903‑M2/7‑48 (MQ=255) gtttatATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATc < 1:1503307‑M2/43‑1 (MQ=255) ttatATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGt > 1:2255668‑M2/5‑50 (MQ=255) atATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTGc > 1:793924‑M2/3‑50 (MQ=255) atATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTGc > 1:270886‑M2/3‑50 (MQ=255) aTCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTGctc > 1:1013847/1‑50 (MQ=255) | AGGGACCGTTTAGTAAAGACGTAATCCTGAAAATCACCTATAACTAGTATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTGCTC > NC_000913/3191650‑3191747 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |