| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,362,162 | Δ5,481 bp | [yhcA]–[yhcF] | [yhcA], yhcD, yhcE, insH‑10, yhcE, [yhcF] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3362162 | 3367642 | 5481 | 27 [0] | [0] 27 | [yhcA]–[yhcF] | [yhcA],yhcD,yhcE,insH‑10,yhcE,[yhcF] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3362161 | 0 (0.000) | 26 (0.870) | 25/98 | 0.1 | 100% | coding (50/675 nt) | yhcA | putative fimbrial chaperone YhcA |
| ? | NC_000913 | 3367643 = | 0 (0.000) | intergenic (+1/‑184) | yhcF/yhcG | DUF1120 domain‑containing protein YhcF/DUF1016 domain‑containing protein YhcG | |||||
AAAAATCGAACTTGATGGGAAAGCTGTGATAAGCGTAGTCTACTTGTGATAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGGT > NC_000913/3367594‑3367692 | tgctcagacacattacattcactgtatttataacaacatcaatgaatact < 1:503848‑M2/1‑1 (MQ=255)tgctcagacacattacattcactgtatttataacaacatcaatgaatact < 1:2044462‑M2/1‑1 (MQ=255) cacattacattcactgtatttataacaacatcaatgaatacTAACAATGc > 1:139273‑M2/42‑50 (MQ=255) tacattcactgtatttataacaacatcaatgaatacTAACAATGCCGGa > 1:1789693‑M2/37‑49 (MQ=255) attcactgtatttataacaacatcaatgaatacTAACAATGCCGGACAg > 1:2196503‑M2/34‑49 (MQ=255) actgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTa < 1:2002007‑M2/21‑1 (MQ=255) tgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTAc > 1:786401‑M2/28‑49 (MQ=255) gtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTa > 1:1481748‑M2/27‑50 (MQ=255) tatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACt < 1:2180795‑M2/23‑1 (MQ=255) atttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTAt > 1:253035‑M2/25‑49 (MQ=255) ataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAgg > 1:746085‑M2/21‑49 (MQ=255) taacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGc < 1:1679007‑M2/30‑1 (MQ=255) acaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCAtt > 1:1114906‑M2/18‑50 (MQ=255) acaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCAt < 1:1647091‑M2/32‑1 (MQ=255) aacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCg < 1:562597‑M2/35‑1 (MQ=255) acatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGt > 1:1346098‑M2/15‑50 (MQ=255) catcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGtt < 1:772090‑M2/37‑1 (MQ=255) catcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGtt > 1:2137766‑M2/14‑50 (MQ=255) atcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGttt < 1:2010278‑M2/38‑1 (MQ=255) aatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTta < 1:1228408‑M2/40‑1 (MQ=255) aatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTta > 1:21812‑M2/10‑49 (MQ=255) gaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAc > 1:605388‑M2/7‑49 (MQ=255) aatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACg < 1:1835675‑M2/44‑1 (MQ=255) aatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGa > 1:2189576‑M2/6‑50 (MQ=255) tacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATc < 1:215186‑M2/47‑1 (MQ=255) cTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCg < 1:650764‑M2/48‑1 (MQ=255) tAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGGt > 1:234892/1‑50 (MQ=255) | AAAAATCGAACTTGATGGGAAAGCTGTGATAAGCGTAGTCTACTTGTGATAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGGT > NC_000913/3367594‑3367692 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |