| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,362,162 | Δ5,481 bp | [yhcA]–[yhcF] | [yhcA], yhcD, yhcE, insH‑10, yhcE, [yhcF] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3362162 | 3367642 | 5481 | 27 [0] | [0] 27 | [yhcA]–[yhcF] | [yhcA],yhcD,yhcE,insH‑10,yhcE,[yhcF] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3362161 | 0 (0.000) | 26 (0.870) | 25/98 | 0.1 | 100% | coding (50/675 nt) | yhcA | putative fimbrial chaperone YhcA |
| ? | NC_000913 | 3367643 = | 0 (0.000) | intergenic (+1/‑184) | yhcF/yhcG | DUF1120 domain‑containing protein YhcF/DUF1016 domain‑containing protein YhcG | |||||
ATGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACCTTAGCCACAGGGATGGTTCCTGAAACATCAGTATTGCTGGTTGATGA > NC_000913/3362112‑3362209 | aTGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATAc < 1:2176887/50‑1 (MQ=255) tGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACt < 1:503848‑M1/50‑2 (MQ=255) tGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACt < 1:2044462‑M1/50‑2 (MQ=255) cacaTTACATTCACTGTATTTATAACAACATCAATGAATACtaacaatgc > 1:139273‑M1/1‑41 (MQ=255) tacattCACTGTATTTATAACAACATCAATGAATACtaacaatgccgga > 1:1789693‑M1/1‑36 (MQ=255) attCACTGTATTTATAACAACATCAATGAATACtaacaatgccggacag > 1:2196503‑M1/1‑33 (MQ=255) aCTGTATTTATAACAACATCAATGAATACtaacaatgccggacaggagta < 1:2002007‑M1/50‑22 (MQ=255) tGTATTTATAACAACATCAATGAATACtaacaatgccggacaggagtac > 1:786401‑M1/1‑27 (MQ=255) gTATTTATAACAACATCAATGAATACtaacaatgccggacaggagtacta > 1:1481748‑M1/1‑26 (MQ=255) tATTTATAACAACATCAATGAATACtaacaatgccggacaggagtact < 1:2180795‑M1/48‑24 (MQ=255) aTTTATAACAACATCAATGAATACtaacaatgccggacaggagtactat > 1:253035‑M1/1‑24 (MQ=255) ataACAACATCAATGAATACtaacaatgccggacaggagtactatcagg > 1:746085‑M1/1‑20 (MQ=255) taACAACATCAATGAATACtaacaatgccggacaggagtactatcaggc < 1:1679007‑M1/49‑31 (MQ=255) acaacaTCAATGAATACtaacaatgccggacaggagtactatcaggcatt > 1:1114906‑M1/1‑17 (MQ=255) acaacaTCAATGAATACtaacaatgccggacaggagtactatcaggcat < 1:1647091‑M1/49‑33 (MQ=255) aacaTCAATGAATACtaacaatgccggacaggagtactatcaggcattcg < 1:562597‑M1/50‑36 (MQ=255) acaTCAATGAATACtaacaatgccggacaggagtactatcaggcattcgt > 1:1346098‑M1/1‑14 (MQ=255) caTCAATGAATACtaacaatgccggacaggagtactatcaggcattcgtt < 1:772090‑M1/50‑38 (MQ=255) caTCAATGAATACtaacaatgccggacaggagtactatcaggcattcgtt > 1:2137766‑M1/1‑13 (MQ=255) aTCAATGAATACtaacaatgccggacaggagtactatcaggcattcgttt < 1:2010278‑M1/50‑39 (MQ=255) aaTGAATACtaacaatgccggacaggagtactatcaggcattcgtttta < 1:1228408‑M1/49‑41 (MQ=255) aaTGAATACtaacaatgccggacaggagtactatcaggcattcgtttta > 1:21812‑M1/1‑9 (MQ=255) gAATACtaacaatgccggacaggagtactatcaggcattcgttttatac > 1:605388‑M1/1‑6 (MQ=255) aaTACtaacaatgccggacaggagtactatcaggcattcgttttatacga > 1:2189576‑M1/1‑5 (MQ=255) aaTACtaacaatgccggacaggagtactatcaggcattcgttttatacg < 1:1835675‑M1/49‑45 (MQ=255) tACtaacaatgccggacaggagtactatcaggcattcgttttatacgatc < 1:215186‑M1/50‑48 (MQ=255) ctaacaatgccggacaggagtactatcaggcattcgttttatacgatcg < 1:650764‑M1/49‑49 (MQ=255) | ATGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACCTTAGCCACAGGGATGGTTCCTGAAACATCAGTATTGCTGGTTGATGA > NC_000913/3362112‑3362209 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |