| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 997,868 | Δ6,818 bp | [elfA]–ycbF | [elfA], elfD, elfC, elfG, ycbU, ycbV, ycbF | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 997868 | 1004685 | 6818 | 41 [0] | [0] 41 | [elfA]–ycbF | [elfA],elfD,elfC,elfG,ycbU,ycbV,ycbF |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 997867 | 0 (0.000) | 40 (1.070) | 30/98 | 0.0 | 100% | intergenic (‑355/‑1) | ssuE/elfA | NADPH‑dependent FMN reductase/putative laminin‑binding fimbrial subunit |
| ? | NC_000913 | 1004686 = | 0 (0.000) | intergenic (+29/‑82) | ycbF/pyrD | putative fimbrial chaperone YcbF/dihydroorotate dehydrogenase, type 2 | |||||
GTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/997820‑997867‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATAC > NC_000913/1004686‑1004731 GTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTT > 1:524951/1‑50 TCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTT > 1:1653002/1‑50 TCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTT > 1:302891/1‑50 ATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGC > 1:35469/1‑50 ATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGC > 1:1982095/1‑50 TTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCC > 1:758929/1‑50 TTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCC > 1:2512236/1‑50 TAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCG < 1:2465929/49‑1 TAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCG < 1:2215861/49‑1 AAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCG > 1:2634381/1‑48 GCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGT > 1:828216/1‑49 ATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAA > 1:1529453/1‑50 TTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAAT > 1:2572268/1‑50 CATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCC > 1:249130/1‑50 CATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCC > 1:374052/1‑50 ATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCT > 1:2268982/1‑50 ATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCT > 1:943542/1‑50 TATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTT > 1:999109/1‑50 TATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTT < 1:87636/50‑1 TTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTT > 1:1887405/1‑50 TTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTT < 1:1875957/50‑1 TTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTT < 1:1579930/50‑1 TTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTG > 1:2484190/1‑50 TACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGG > 1:1725006/1‑50 CGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTC < 1:1700906/50‑1 CGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTC < 1:258271/50‑1 GAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCC > 1:601255/1‑50 AAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCG < 1:2138256/50‑1 AAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCC > 1:23173/1‑49 GAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAA < 1:2165817/50‑1 ATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTC > 1:1677201/1‑50 ATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTC < 1:63771/50‑1 ATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTC < 1:2519169/50‑1 ATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTC < 1:817275/50‑1 CAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCG > 1:1217795/1‑49 AGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCA < 1:871632/50‑1 GATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACA > 1:614883/1‑50 TGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATA < 1:1869605/50‑1 ATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAAT < 1:1776527/50‑1 AACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATAC > 1:471728/1‑50 GTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/997820‑997867‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATAC > NC_000913/1004686‑1004731 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |