| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 997,868 | Δ6,818 bp | [elfA]–ycbF | [elfA], elfD, elfC, elfG, ycbU, ycbV, ycbF | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 997868 | 1004685 | 6818 | 41 [0] | [0] 41 | [elfA]–ycbF | [elfA],elfD,elfC,elfG,ycbU,ycbV,ycbF |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 997867 | 0 (0.000) | 40 (1.070) | 30/98 | 0.0 | 100% | intergenic (‑355/‑1) | ssuE/elfA | NADPH‑dependent FMN reductase/putative laminin‑binding fimbrial subunit |
| ? | NC_000913 | 1004686 = | 0 (0.000) | intergenic (+29/‑82) | ycbF/pyrD | putative fimbrial chaperone YcbF/dihydroorotate dehydrogenase, type 2 | |||||
ATGTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGATGAAAAAAAGTGTATTGACGGCGTTTATAACTGTGGTATGTGCAA > NC_000913/997818‑997913 | aTGTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACg > 1:2096062/1‑50 (MQ=255) gTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtt > 1:524951‑M1/1‑48 (MQ=255) tCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGttt > 1:1653002‑M1/1‑47 (MQ=255) tCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGttt > 1:302891‑M1/1‑47 (MQ=255) aTTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgc > 1:35469‑M1/1‑45 (MQ=255) aTTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgc > 1:1982095‑M1/1‑45 (MQ=255) tttAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgcc > 1:758929‑M1/1‑44 (MQ=255) tttAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgcc > 1:2512236‑M1/1‑44 (MQ=255) tAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccg < 1:2465929‑M1/49‑8 (MQ=255) tAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccg < 1:2215861‑M1/49‑8 (MQ=255) aaaGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccg > 1:2634381‑M1/1‑41 (MQ=255) gCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggt > 1:828216‑M1/1‑37 (MQ=255) aTTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaa > 1:1529453‑M1/1‑35 (MQ=255) ttATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaat > 1:2572268‑M1/1‑34 (MQ=255) cATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattccc > 1:249130‑M1/1‑30 (MQ=255) cATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattccc > 1:374052‑M1/1‑30 (MQ=255) atatTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattccct > 1:943542‑M1/1‑29 (MQ=255) atatTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattccct > 1:2268982‑M1/1‑29 (MQ=255) tatTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattccctt > 1:999109‑M1/1‑28 (MQ=255) tatTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattccctt < 1:87636‑M1/50‑23 (MQ=255) tttACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattccctttt < 1:1579930‑M1/50‑25 (MQ=255) tttACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattccctttt > 1:1887405‑M1/1‑26 (MQ=255) tttACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattccctttt < 1:1875957‑M1/50‑25 (MQ=255) ttACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttg > 1:2484190‑M1/1‑25 (MQ=255) tACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttgg > 1:1725006‑M1/1‑24 (MQ=255) cGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttggtc < 1:258271‑M1/50‑29 (MQ=255) cGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttggtc < 1:1700906‑M1/50‑29 (MQ=255) gAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttggtcc > 1:601255‑M1/1‑21 (MQ=255) aaGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttggtccg < 1:2138256‑M1/50‑31 (MQ=255) aaGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttggtcc > 1:23173‑M1/1‑20 (MQ=255) gagaTCAGGATGATAACGtttgccgcaggtcaattcccttttggtccgaa < 1:2165817‑M1/50‑33 (MQ=255) aTCAGGATGATAACGtttgccgcaggtcaattcccttttggtccgaactc < 1:2519169‑M1/50‑36 (MQ=255) aTCAGGATGATAACGtttgccgcaggtcaattcccttttggtccgaactc < 1:63771‑M1/50‑36 (MQ=255) aTCAGGATGATAACGtttgccgcaggtcaattcccttttggtccgaactc > 1:1677201‑M1/1‑15 (MQ=255) aTCAGGATGATAACGtttgccgcaggtcaattcccttttggtccgaactc < 1:817275‑M1/50‑36 (MQ=255) cAGGATGATAACGtttgccgcaggtcaattcccttttggtccgaactcg > 1:1217795‑M1/1‑13 (MQ=255) aGGATGATAACGtttgccgcaggtcaattcccttttggtccgaactcgca < 1:871632‑M1/50‑39 (MQ=255) gatgatAACGtttgccgcaggtcaattcccttttggtccgaactcgcaca > 1:614883‑M1/1‑10 (MQ=255) tgatAACGtttgccgcaggtcaattcccttttggtccgaactcgcacata < 1:1869605‑M1/50‑43 (MQ=255) atAACGtttgccgcaggtcaattcccttttggtccgaactcgcacataat < 1:1776527‑M1/50‑45 (MQ=255) aaCGtttgccgcaggtcaattcccttttggtccgaactcgcacataatac > 1:471728‑M1/1‑4 (MQ=255) | ATGTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGATGAAAAAAAGTGTATTGACGGCGTTTATAACTGTGGTATGTGCAA > NC_000913/997818‑997913 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |