| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,129,397 | Δ11,591 bp | flgN–flgL | flgN, flgM, flgA, flgB, flgC, flgD, flgE, flgF, flgG, flgH, flgI, flgJ, flgK, flgL | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1129397 | 1140987 | 11591 | 28 [0] | [0] 28 | flgN–flgL | flgN,flgM,flgA,flgB,flgC,flgD,flgE,flgF,flgG,flgH,flgI,flgJ,flgK,flgL |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1129396 | 0 (0.000) | 27 (0.720) | 24/98 | 0.2 | 100% | intergenic (+22/+18) | murJ/flgN | putative lipid II flippase MurJ/flagellar biosynthesis protein FlgN |
| ? | NC_000913 | 1140988 = | 0 (0.000) | intergenic (+2/+194) | flgL/rne | flagellar hook‑filament junction protein 2/ribonuclease E | |||||
AGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1129350‑1129396‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGCT > NC_000913/1140988‑1141035 AGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTC < 1:139854/50‑1AGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTC < 1:1791838/50‑1 GAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCG > 1:2784767/1‑50 TTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTT < 1:559959/50‑1 TGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGTAGTGTTCGCTTT < 1:1204378/49‑1 GCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTA > 1:2149814/1‑49 GCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACA > 1:2091815/1‑50 CCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACA > 1:572470/1‑49 CCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACA > 1:2348853/1‑49 ACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCA > 1:1477940/1‑50 CGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCAT < 1:353304/50‑1 GTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGA < 1:2406336/50‑1 TAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAA < 1:1432982/49‑1 AATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGG > 1:1949466/1‑50 CATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATG > 1:1209072/1‑50 CCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTT < 1:1177146/49‑1 CGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTG < 1:2135519/50‑1 CGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTG > 1:1162455/1‑50 GGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGT > 1:915579/1‑50 GCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTC < 1:1695550/50‑1 CCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCT < 1:1696407/50‑1 CTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTG < 1:2810283/50‑1 AGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTG < 1:731174/50‑1 GTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGC > 1:2032549/1‑50 GTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGC > 1:299544/1‑50 TGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGCT < 1:546917/50‑1 TGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGCT > 1:1662653/1‑50 AGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1129350‑1129396‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGCT > NC_000913/1140988‑1141035 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |