| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,129,397 | Δ11,591 bp | flgN–flgL | flgN, flgM, flgA, flgB, flgC, flgD, flgE, flgF, flgG, flgH, flgI, flgJ, flgK, flgL | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1129397 | 1140987 | 11591 | 28 [0] | [0] 28 | flgN–flgL | flgN,flgM,flgA,flgB,flgC,flgD,flgE,flgF,flgG,flgH,flgI,flgJ,flgK,flgL |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1129396 | 0 (0.000) | 27 (0.720) | 24/98 | 0.2 | 100% | intergenic (+22/+18) | murJ/flgN | putative lipid II flippase MurJ/flagellar biosynthesis protein FlgN |
| ? | NC_000913 | 1140988 = | 0 (0.000) | intergenic (+2/+194) | flgL/rne | flagellar hook‑filament junction protein 2/ribonuclease E | |||||
ATTTACCGATATGCAGGGATTGTCGCTCTTCCAGCTCAGCAAATAATTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGCTCT > NC_000913/1140941‑1141037 | agaatttgcccgccggacggtgtaacaatgcattccggcctgcagtgTTc < 1:139854‑M2/3‑1 (MQ=255)agaatttgcccgccggacggtgtaacaatgcattccggcctgcagtgTTc < 1:1791838‑M2/3‑1 (MQ=255) gaatttgcccgccggacggtgtaacaatgcattccggcctgcagtgTTCg > 1:2784767‑M2/47‑50 (MQ=255) tttgcccgccggacggtgtaacaatgcattccggcctgcagtgTTCGCtt < 1:559959‑M2/7‑1 (MQ=255) tgcccgccggacggtgtaacaatgcattccggcctgtagtgTTCGCttt < 1:1204378‑M2/8‑1 (MQ=255) gcccgccggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTa > 1:2149814‑M2/41‑49 (MQ=255) gccggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACa > 1:2091815‑M2/37‑50 (MQ=255) ccggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACa > 1:572470‑M2/36‑49 (MQ=255) ccggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACa > 1:2348853‑M2/36‑49 (MQ=255) acggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCa > 1:1477940‑M2/32‑50 (MQ=255) cggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCAt < 1:353304‑M2/20‑1 (MQ=255) gtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGa < 1:2406336‑M2/22‑1 (MQ=255) taacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGaaa < 1:1432982‑M2/24‑1 (MQ=255) aatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTggg > 1:1949466‑M2/22‑50 (MQ=255) cattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATg > 1:1209072‑M2/18‑50 (MQ=255) ccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGttt < 1:1177146‑M2/36‑1 (MQ=255) cggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTg < 1:2135519‑M2/38‑1 (MQ=255) cggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTg > 1:1162455‑M2/13‑50 (MQ=255) ggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGt > 1:915579‑M2/12‑50 (MQ=255) gcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTc < 1:1695550‑M2/40‑1 (MQ=255) cctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTct < 1:1696407‑M2/41‑1 (MQ=255) ctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctg < 1:2810283‑M2/42‑1 (MQ=255) agtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctgcctg < 1:731174‑M2/46‑1 (MQ=255) gtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctgcctgc > 1:2032549‑M2/4‑50 (MQ=255) gtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctgcctgc > 1:299544‑M2/4‑50 (MQ=255) tgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGct > 1:1662653‑M2/3‑50 (MQ=255) tgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGct < 1:546917‑M2/48‑1 (MQ=255) ttCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGctct < 1:1555199/50‑1 (MQ=255) | ATTTACCGATATGCAGGGATTGTCGCTCTTCCAGCTCAGCAAATAATTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGCTCT > NC_000913/1140941‑1141037 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |