Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,962,566 Δ16,764 bp flhEinsA‑5 17 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1962566 1979329 16764 52 [0] [0] 52 flhE–insA‑5 flhE,flhA,flhB,cheZ,cheY,cheB,cheR,tap,tar,cheW,cheA,motB,motA,flhC,flhD,insB‑5,insA‑5

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 19625650 (0.000)50 (1.370) 37/96 0.0 100% intergenic (+105/+15) yecT/flhE protein YecT/flagellar protein
?NC_000913 1979330 = 0 (0.000)intergenic (‑115/‑423) insA‑5/uspC IS1 protein InsA/universal stress protein C

AAGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1962516‑1962565
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGT  >  NC_000913/1979330‑1979378
                                                                                                   
AAGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGT                                                   >  1:1882657/1‑50
 AGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTC                                                  <  1:2217235/50‑1
  GACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCG                                                 >  1:1622749/1‑50
   ACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGC                                                >  1:2162906/1‑50
   ACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGC                                                >  1:74776/1‑50
   ACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGC                                                >  1:2336721/1‑50
    CATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCT                                               <  1:2503663/50‑1
      TCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTAC                                             <  1:146555/50‑1
       CGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACG                                            >  1:499735/1‑50
       CGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACG                                            >  1:2236814/1‑50
       CGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACG                                            >  1:298973/1‑50
       CGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACG                                            >  1:276806/1‑50
        GAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGC                                           <  1:751692/50‑1
        GAGCCTTTTTCACCGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGC                                           >  1:1659164/1‑50
          GCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTA                                         <  1:812410/50‑1
           CCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAG                                        >  1:75741/1‑50
           CCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAG                                        <  1:2141080/50‑1
               TTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAG                                    >  1:2639680/1‑50
               TTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCA                                      <  1:2642472/48‑1
                TTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAG                                    >  1:268650/1‑49
                    CTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAA                               <  1:1552909/50‑1
                    CTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAA                                >  1:963344/1‑49
                     TGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAA                              >  1:1544401/1‑50
                      GAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAAT                             >  1:1694125/1‑50
                       AGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAAT                             <  1:2324486/49‑1
                       AGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAAT                             >  1:2480359/1‑49
                       AGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAA                              <  1:621466/48‑1
                       AGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAA                              <  1:935520/48‑1
                        GTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGA                           <  1:2403144/50‑1
                         TTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGA                           >  1:1019324/1‑49
                           ATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAA                         >  1:353363/1‑49
                            TTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACA                       <  1:2147112/50‑1
                             TAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAG                      >  1:1567552/1‑50
                               AACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGG                     >  1:2621773/1‑49
                                 CATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAAT                  <  1:1858551/50‑1
                                 CATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAA                   >  1:421497/1‑49
                                 CATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAA                   >  1:1964445/1‑49
                                   TACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAA                <  1:1312250/50‑1
                                   TACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAA                <  1:1561956/50‑1
                                        GCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGA            <  1:1426333/49‑1
                                        GCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGA            <  1:800165/49‑1
                                        GCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCG             <  1:2587415/48‑1
                                         CGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAA          <  1:1691093/50‑1
                                          GAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAc         >  1:680732/1‑49
                                          GAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAT         >  1:475443/1‑50
                                          GAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAT         >  1:810664/1‑50
                                          GAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAT         >  1:1370252/1‑50
                                           AGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATG        >  1:342825/1‑50
                                           AGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATG        >  1:1861286/1‑50
                                               CGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGAT    <  1:2011136/50‑1
                                                GTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATG   <  1:1396190/50‑1
                                                 TCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGT  <  1:1758202/50‑1
                                                                                                   
AAGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1962516‑1962565
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGT  >  NC_000913/1979330‑1979378

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.