| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,962,566 | Δ16,764 bp | flhE–insA‑5 | 17 genes flhE, flhA, flhB, cheZ, cheY, cheB, cheR, tap, tar, cheW, cheA, motB, motA, flhC, flhD, insB‑5, insA‑5 |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1962566 | 1979329 | 16764 | 52 [0] | [0] 52 | flhE–insA‑5 | flhE,flhA,flhB,cheZ,cheY,cheB,cheR,tap,tar,cheW,cheA,motB,motA,flhC,flhD,insB‑5,insA‑5 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1962565 | 0 (0.000) | 50 (1.370) | 37/96 | 0.0 | 100% | intergenic (+105/+15) | yecT/flhE | protein YecT/flagellar protein |
| ? | NC_000913 | 1979330 = | 0 (0.000) | intergenic (‑115/‑423) | insA‑5/uspC | IS1 protein InsA/universal stress protein C | |||||
TAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT > NC_000913/1979281‑1979379 | agacatcgagcctttttcactgagttattaaacatactcgcgagcgcgtc < 1:2217235‑M2/1‑1 (MQ=255) gacatcgagcctttttcactgagttattaaacatactcgcgagcgcgtcg > 1:1622749‑M2/49‑50 (MQ=255) acatcgagcctttttcactgagttattaaacatactcgcgagcgcgtcgc > 1:2162906‑M2/48‑50 (MQ=255) acatcgagcctttttcactgagttattaaacatactcgcgagcgcgtcgc > 1:74776‑M2/48‑50 (MQ=255) acatcgagcctttttcactgagttattaaacatactcgcgagcgcgtcgc > 1:2336721‑M2/48‑50 (MQ=255) catcgagcctttttcactgagttattaaacatactcgcgagcgcgtcgct < 1:2503663‑M2/4‑1 (MQ=255) tcgagcctttttcactgagttattaaacatactcgcgagcgcgtcgctac < 1:146555‑M2/6‑1 (MQ=255) cgagcctttttcactgagttattaaacatactcgcgagcgcgtcgctacg > 1:499735‑M2/44‑50 (MQ=255) cgagcctttttcactgagttattaaacatactcgcgagcgcgtcgctacg > 1:298973‑M2/44‑50 (MQ=255) cgagcctttttcactgagttattaaacatactcgcgagcgcgtcgctacg > 1:276806‑M2/44‑50 (MQ=255) cgagcctttttcactgagttattaaacatactcgcgagcgcgtcgctacg > 1:2236814‑M2/44‑50 (MQ=255) gagcctttttcactgagttattaaacatactcgcgagcgcgtcgctacgc < 1:751692‑M2/8‑1 (MQ=255) gagcctttttcaccgagttattaaacatactcgcgagcgcgtcgctacgc > 1:1659164‑M2/43‑50 (MQ=255) gcctttttcactgagttattaaacatactcgcgagcgcgtcgctacgcta < 1:812410‑M2/10‑1 (MQ=255) cctttttcactgagttattaaacatactcgcgagcgcgtCGCTACGCTag < 1:2141080‑M2/11‑1 (MQ=255) cctttttcactgagttattaaacatactcgcgagcgcgtCGCTACGCTag > 1:75741‑M2/40‑50 (MQ=255) tttcactgagttattaaacatactcgcgagcgcgtCGCTACGCTagcaag > 1:2639680‑M2/36‑50 (MQ=255) tttcactgagttattaaacatactcgcgagcgcgtCGCTACGCTagca < 1:2642472‑M2/13‑1 (MQ=255) ttcactgagttattaaacatactcgcgagcgcgtCGCTACGCTagcaag > 1:268650‑M2/35‑49 (MQ=255) ctgagttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCaaaa < 1:1552909‑M2/20‑1 (MQ=255) ctgagttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCaaa > 1:963344‑M2/31‑49 (MQ=255) tgagttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCaaaaa > 1:1544401‑M2/30‑50 (MQ=255) gagttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAAt > 1:1694125‑M2/29‑50 (MQ=255) agttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCaaaaa < 1:621466‑M2/21‑1 (MQ=255) agttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCaaaaa < 1:935520‑M2/21‑1 (MQ=255) agttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAAt < 1:2324486‑M2/22‑1 (MQ=255) agttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAAt > 1:2480359‑M2/28‑49 (MQ=255) gttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGa < 1:2403144‑M2/24‑1 (MQ=255) ttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGa > 1:1019324‑M2/26‑49 (MQ=255) attaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGaaa > 1:353363‑M2/24‑49 (MQ=255) ttaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACa < 1:2147112‑M2/28‑1 (MQ=255) taaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAg > 1:1567552‑M2/22‑50 (MQ=255) aacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAgg > 1:2621773‑M2/20‑49 (MQ=255) catactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaat < 1:1858551‑M2/33‑1 (MQ=255) catactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaa > 1:1964445‑M2/18‑49 (MQ=255) catactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaa > 1:421497‑M2/18‑49 (MQ=255) tactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaataa < 1:1312250‑M2/35‑1 (MQ=255) tactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaataa < 1:1561956‑M2/35‑1 (MQ=255) gcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCg < 1:2587415‑M2/38‑1 (MQ=255) gcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGa < 1:1426333‑M2/39‑1 (MQ=255) gcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGa < 1:800165‑M2/39‑1 (MQ=255) cgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGaaa < 1:1691093‑M2/41‑1 (MQ=255) gagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCgaaac > 1:680732‑M2/9‑49 (MQ=255) gagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAt > 1:475443‑M2/9‑50 (MQ=255) gagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAt > 1:1370252‑M2/9‑50 (MQ=255) gagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAt > 1:810664‑M2/9‑50 (MQ=255) agcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATg > 1:342825‑M2/8‑50 (MQ=255) agcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATg > 1:1861286‑M2/8‑50 (MQ=255) cgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGAt < 1:2011136‑M2/47‑1 (MQ=255) gtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATg < 1:1396190‑M2/48‑1 (MQ=255) tCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGt < 1:1758202‑M2/49‑1 (MQ=255) cgctacgctaGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGtt > 1:100247/1‑50 (MQ=255) | TAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT > NC_000913/1979281‑1979379 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |