| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,509,631 | Δ8,319 bp | [yfeO]–pdeA | [yfeO], ypeC, mntH, nupC, insL‑3, pdeA | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2509631 | 2517949 | 8319 | 35 [0] | [0] 35 | [yfeO]–pdeA | [yfeO],ypeC,mntH,nupC,insL‑3,pdeA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2509630 | 0 (0.000) | 34 (0.910) | 29/98 | 0.1 | 100% | coding (1/1257 nt) | yfeO | putative transport protein YfeO |
| ? | NC_000913 | 2517950 = | 0 (0.000) | intergenic (‑118/+91) | pdeA/alaX | putative c‑di‑GMP phosphodiesterase PdeA/tRNA‑Ala | |||||
TGCAAGCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2509583‑2509630‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCAAAAAG > NC_000913/2517950‑2517998 TGCAAGCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACAC < 1:2783601/49‑1 CAAGCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACACAG < 1:571426/49‑1 AAGCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGC < 1:319372/50‑1 TGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGCGGCA > 1:239831/1‑50 GGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGCGGCACT < 1:484268/50‑1 GGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGCGGCAC < 1:2757845/49‑1 GGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGCGGCAC > 1:1185651/1‑49 AAACTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGCGGCACTAAC < 1:1029688/50‑1 AAACTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGCGGCACTAAC > 1:212598/1‑50 AACTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGCGGCACTAACC < 1:1429040/50‑1 AACTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGCGGCACTAACC > 1:1111146/1‑50 CTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGCGGCACTAACCCG < 1:250048/50‑1 AAGTATCTGACCCCGCATAAGGAATAGAACACAGGCGGCACTAACCCGGA > 1:2785682/1‑50 GTATCTGACCCCGCATAAGGAATAGAACACAGGCGGCACTAACCCGGACG > 1:121201/1‑50 TATCTGACCCCGCATAAGGAATAGAACACAGGCGGCACTAACCCGGACGT < 1:1867415/50‑1 TCTGACCCCGCATAAGGAATAGAACACAGGCGGCACTAACCCGGACG > 1:720430/1‑47 TGACCCCGCATAAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGAC > 1:622747/1‑50 TGACCCCGCATAAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGAC > 1:2711910/1‑50 GACCCCGCATAAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACT > 1:430376/1‑50 CCCCGCATAAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGT < 1:2657249/50‑1 CGCATAAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTATT < 1:375914/50‑1 CGCATAAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTATT < 1:2530999/50‑1 GCATAAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTATTA < 1:1102194/50‑1 GCATAAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTATTA > 1:1749393/1‑50 ATAAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTATTACA < 1:426528/50‑1 ATAAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTATTACA < 1:705294/50‑1 AAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTATTACAA > 1:245001/1‑49 AAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTATTACAA > 1:801942/1‑49 AACACAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCAA > 1:311715/1‑49 AACACAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCAA > 1:146847/1‑49 ACACAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCAAAA < 1:2345909/50‑1 CACAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCAAA > 1:2135483/1‑48 ACAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCAAAAAG > 1:217701/1‑50 ACAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCAAAAAG < 1:1143055/50‑1 TGCAAGCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2509583‑2509630‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCAAAAAG > NC_000913/2517950‑2517998 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |