| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,362,162 | Δ5,481 bp | [yhcA]–[yhcF] | [yhcA], yhcD, yhcE, insH‑10, yhcE, [yhcF] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3362162 | 3367642 | 5481 | 31 [0] | [0] 31 | [yhcA]–[yhcF] | [yhcA],yhcD,yhcE,insH‑10,yhcE,[yhcF] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3362161 | 0 (0.000) | 30 (0.800) | 27/98 | 0.1 | 100% | coding (50/675 nt) | yhcA | putative fimbrial chaperone YhcA |
| ? | NC_000913 | 3367643 = | 0 (0.000) | intergenic (+1/‑184) | yhcF/yhcG | DUF1120 domain‑containing protein YhcF/DUF1016 domain‑containing protein YhcG | |||||
CTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3362115‑3362161‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGG > NC_000913/3367643‑3367691 CTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTA < 1:2012194/49‑1 AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAA > 1:645335/1‑50 ACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATG > 1:1947993/1‑50 CATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCG > 1:1944578/1‑50 CATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCG < 1:1775662/50‑1 ATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCG > 1:843914/1‑49 TTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGA > 1:372409/1‑50 ATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGG < 1:1580386/50‑1 TTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAG > 1:1856207/1‑48 CACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAG < 1:1211660/49‑1 CTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTAC > 1:2555435/1‑50 TATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTAT < 1:160004/50‑1 TATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTAT < 1:1084348/50‑1 ATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTAT > 1:2630049/1‑49 TTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAG > 1:2242563/1‑50 CAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTC < 1:270902/50‑1 AACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCG < 1:1387714/50‑1 ACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGT > 1:720124/1‑50 ATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTT > 1:2230451/1‑50 TCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTT > 1:1070831/1‑49 AATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTAT < 1:439168/50‑1 AATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTAT < 1:124169/50‑1 AATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTA > 1:1516432/1‑49 AATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTA < 1:1032792/49‑1 AATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGA > 1:2560957/1‑50 AATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGA < 1:1276636/50‑1 ATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGAT < 1:579886/50‑1 TACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATC > 1:2679970/1‑50 TACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATC > 1:876858/1‑50 CTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGG > 1:1458051/1‑50 CTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3362115‑3362161‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGG > NC_000913/3367643‑3367691 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |