| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,362,162 | Δ5,481 bp | [yhcA]–[yhcF] | [yhcA], yhcD, yhcE, insH‑10, yhcE, [yhcF] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3362162 | 3367642 | 5481 | 31 [0] | [0] 31 | [yhcA]–[yhcF] | [yhcA],yhcD,yhcE,insH‑10,yhcE,[yhcF] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3362161 | 0 (0.000) | 30 (0.800) | 27/98 | 0.1 | 100% | coding (50/675 nt) | yhcA | putative fimbrial chaperone YhcA |
| ? | NC_000913 | 3367643 = | 0 (0.000) | intergenic (+1/‑184) | yhcF/yhcG | DUF1120 domain‑containing protein YhcF/DUF1016 domain‑containing protein YhcG | |||||
AAATCGAACTTGATGGGAAAGCTGTGATAAGCGTAGTCTACTTGTGATAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGGT > NC_000913/3367596‑3367692 | ctcagacacattacattcactgtatttataacaacatcaatgaatacTa < 1:2012194‑M2/2‑1 (MQ=255) agacacattacattcactgtatttataacaacatcaatgaatacTAACaa > 1:645335‑M2/45‑50 (MQ=255) acacattacattcactgtatttataacaacatcaatgaatacTAACAATg > 1:1947993‑M2/43‑50 (MQ=255) cattacattcactgtatttataacaacatcaatgaatacTAACAATGCCg > 1:1944578‑M2/40‑50 (MQ=255) cattacattcactgtatttataacaacatcaatgaatacTAACAATGCCg < 1:1775662‑M2/11‑1 (MQ=255) attacattcactgtatttataacaacatcaatgaatacTAACAATGCCg > 1:843914‑M2/39‑49 (MQ=255) ttacattcactgtatttataacaacatcaatgaatacTAACAATGCCGGa > 1:372409‑M2/38‑50 (MQ=255) attcactgtatttataacaacatcaatgaatacTAACAATGCCGGACAgg < 1:1580386‑M2/17‑1 (MQ=255) ttcactgtatttataacaacatcaatgaatacTAACAATGCCGGACAg > 1:1856207‑M2/33‑48 (MQ=255) cactgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAg < 1:1211660‑M2/19‑1 (MQ=255) ctgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTAc > 1:2555435‑M2/29‑50 (MQ=255) tatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTAt < 1:160004‑M2/25‑1 (MQ=255) tatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTAt < 1:1084348‑M2/25‑1 (MQ=255) atttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTAt > 1:2630049‑M2/25‑49 (MQ=255) ttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAg > 1:2242563‑M2/23‑50 (MQ=255) caacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTc < 1:270902‑M2/34‑1 (MQ=255) aacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCg < 1:1387714‑M2/35‑1 (MQ=255) acatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGt > 1:720124‑M2/15‑50 (MQ=255) atcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGttt > 1:2230451‑M2/13‑50 (MQ=255) tcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGttt > 1:1070831‑M2/12‑49 (MQ=255) aatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTtat < 1:439168‑M2/41‑1 (MQ=255) aatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTtat < 1:124169‑M2/41‑1 (MQ=255) aatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTta > 1:1516432‑M2/10‑49 (MQ=255) aatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTta < 1:1032792‑M2/40‑1 (MQ=255) aatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGa > 1:2560957‑M2/6‑50 (MQ=255) aatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGa < 1:1276636‑M2/45‑1 (MQ=255) atacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGAt < 1:579886‑M2/46‑1 (MQ=255) tacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATc > 1:2679970‑M2/4‑50 (MQ=255) tacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATc > 1:876858‑M2/4‑50 (MQ=255) cTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCgg > 1:1458051‑M2/2‑50 (MQ=255) tAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGGt > 1:721591/1‑50 (MQ=255) | AAATCGAACTTGATGGGAAAGCTGTGATAAGCGTAGTCTACTTGTGATAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGGT > NC_000913/3367596‑3367692 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |