| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,453,928 | Δ15,926 bp | gspA–[chiA] | 16 genes gspA, gspC, gspD, gspE, gspF, gspG, gspH, gspI, gspJ, gspK, gspL, gspM, gspO, bfr, bfd, [chiA] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3453928 | 3469853 | 15926 | 42 [0] | [0] 42 | gspA–[chiA] | gspA,gspC,gspD,gspE,gspF,gspG,gspH,gspI,gspJ,gspK,gspL,gspM,gspO,bfr,bfd,[chiA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3453927 | 0 (0.000) | 38 (1.080) | 27/92 | 0.1 | 100% | coding (1/420 nt) | gspB | putative general secretion pathway protein B |
| ? | NC_000913 | 3469854 = | 0 (0.000) | intergenic (‑1/+291) | chiA/tufA | endochitinase/translation elongation factor Tu 1 | |||||
TGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3453881‑3453927‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGG > NC_000913/3469854‑3469901 TGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTAT < 1:1178484/50‑1TGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTAT < 1:2743068/50‑1 GACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTAT > 1:1651134/1‑49 ACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAA < 1:1503593/50‑1 ACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATA < 1:2370851/49‑1 TCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTT < 1:658520/49‑1 TCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTT < 1:2757264/49‑1 TCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTG < 1:1956723/48‑1 CTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACG > 1:1384914/1‑50 CTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTA > 1:1714476/1‑49 ACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAA > 1:1290987/1‑50 GCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACT < 1:287541/50‑1 CGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCA < 1:2020252/50‑1 GCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAA < 1:2721239/50‑1 CGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAA < 1:762551/50‑1 GATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAAC < 1:2729104/50‑1 GATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAAC < 1:1043106/50‑1 GATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAA > 1:1933247/1‑49 ATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAAC > 1:247213/1‑49 ATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAAC > 1:1845159/1‑49 ATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAA > 1:2415455/1‑49 ATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAA > 1:2089625/1‑49 ATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAA > 1:1863523/1‑49 ATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAA > 1:1484600/1‑49 TAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAA < 1:2758679/49‑1 TAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAA < 1:1381649/49‑1 ATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCC > 1:25208/1‑50 ATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCC < 1:2749510/50‑1 TTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCT < 1:1850889/50‑1 CAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAC > 1:2187982/1‑50 CAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTA < 1:751795/49‑1 AAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACG > 1:1605397/1‑50 AAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACG > 1:1271616/1‑50 AAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACG > 1:1122453/1‑50 AAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAC < 1:2756237/49‑1 AAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAC < 1:2210167/49‑1 AACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGC < 1:485863/50‑1 ACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACG > 1:284761/1‑48 ATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGG < 1:1101413/50‑1 ATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGG < 1:99235/50‑1 ATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGG < 1:1238337/50‑1 TTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGG > 1:2143131/1‑49 TGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3453881‑3453927‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGG > NC_000913/3469854‑3469901 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |