| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,453,928 | Δ15,926 bp | gspA–[chiA] | 16 genes gspA, gspC, gspD, gspE, gspF, gspG, gspH, gspI, gspJ, gspK, gspL, gspM, gspO, bfr, bfd, [chiA] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3453928 | 3469853 | 15926 | 42 [0] | [0] 42 | gspA–[chiA] | gspA,gspC,gspD,gspE,gspF,gspG,gspH,gspI,gspJ,gspK,gspL,gspM,gspO,bfr,bfd,[chiA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3453927 | 0 (0.000) | 38 (1.080) | 27/92 | 0.1 | 100% | coding (1/420 nt) | gspB | putative general secretion pathway protein B |
| ? | NC_000913 | 3469854 = | 0 (0.000) | intergenic (‑1/+291) | chiA/tufA | endochitinase/translation elongation factor Tu 1 | |||||
TGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCTTCATCCC > NC_000913/3453881‑3453975 | tGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATtat < 1:1178484‑M1/50‑4 (MQ=255)tGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATtat < 1:2743068‑M1/50‑4 (MQ=255) gACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATtat > 1:1651134‑M1/1‑46 (MQ=255) aCCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATtataa < 1:1503593‑M1/50‑6 (MQ=255) aCCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATtata < 1:2370851‑M1/49‑5 (MQ=255) tctttctGCTCACGCGCGGCGATATAGAATTCAAACATtataatccctt < 1:658520‑M1/49‑12 (MQ=255) tctttctGCTCACGCGCGGCGATATAGAATTCAAACATtataatccctt < 1:2757264‑M1/49‑12 (MQ=255) tctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtg < 1:1956723‑M1/48‑15 (MQ=255) ctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacg > 1:1384914‑M1/1‑33 (MQ=255) cTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacgta > 1:1714476‑M1/1‑30 (MQ=255) aCGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacgtaaaaa > 1:1290987‑M1/1‑27 (MQ=255) gcgcgGCGATATAGAATTCAAACATtataatcccttgtgacgtaaaaact < 1:287541‑M1/50‑26 (MQ=255) cggcgATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgca < 1:2020252‑M1/50‑29 (MQ=255) gcgATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaa < 1:2721239‑M1/50‑31 (MQ=255) cgATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaa < 1:762551‑M1/50‑32 (MQ=255) gATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaac < 1:2729104‑M1/50‑33 (MQ=255) gATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaac < 1:1043106‑M1/50‑33 (MQ=255) gATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaa > 1:1933247‑M1/1‑18 (MQ=255) atatAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaac > 1:247213‑M1/1‑17 (MQ=255) atatAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaac > 1:1845159‑M1/1‑17 (MQ=255) ataGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaa > 1:2415455‑M1/1‑15 (MQ=255) ataGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaa > 1:2089625‑M1/1‑15 (MQ=255) ataGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaa > 1:1863523‑M1/1‑15 (MQ=255) ataGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaa > 1:1484600‑M1/1‑15 (MQ=255) taGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaa < 1:2758679‑M1/49‑36 (MQ=255) taGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaa < 1:1381649‑M1/49‑36 (MQ=255) aTTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcc > 1:25208‑M1/1‑10 (MQ=255) aTTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcc < 1:2749510‑M1/50‑41 (MQ=255) ttCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcct < 1:1850889‑M1/50‑42 (MQ=255) cAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctac > 1:2187982‑M1/1‑7 (MQ=255) cAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtccta < 1:751795‑M1/49‑43 (MQ=255) aaaCATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacg > 1:1605397‑M1/1‑6 (MQ=255) aaaCATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacg > 1:1271616‑M1/1‑6 (MQ=255) aaaCATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacg > 1:1122453‑M1/1‑6 (MQ=255) aaaCATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctac < 1:2756237‑M1/49‑44 (MQ=255) aaaCATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctac < 1:2210167‑M1/49‑44 (MQ=255) aaCATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacgc < 1:485863‑M1/50‑46 (MQ=255) aCATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacg > 1:284761‑M1/1‑4 (MQ=255) aTtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacgcagg < 1:1101413‑M1/50‑49 (MQ=255) aTtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacgcagg < 1:99235‑M1/50‑49 (MQ=255) aTtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacgcagg < 1:1238337‑M1/50‑49 (MQ=255) ttataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacgcagg > 1:2143131‑M1/1‑1 (MQ=255) | TGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCTTCATCCC > NC_000913/3453881‑3453975 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |