| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,496,676 | Δ53,036 bp | intB–fimH | 54 genes intB, insC‑6, insD‑6, yjgX, yjgZ, insG, yjhB, yjhC, ythA, yjhD, yjhE, insO, insI‑3, insO, insO, yjhV, fecE, fecD, fecC, fecB, fecA, fecR, fecI, insA‑7, yjhU, yjhF, yjhG, yjhH, yjhI, sgcR, sgcE, sgcA, ryjB, sgcQ, sgcC, sgcB, sgcX, yjhP, yjhQ, topAI, yjhZ, yjhR, nanS, nanM, nanC, fimB, fimE, fimA, fimI, fimC, fimD, fimF, fimG, fimH |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4496676 | 4549711 | 53036 | 54 [0] | [0] 55 | intB–fimH | intB,insC‑6,insD‑6,yjgX,yjgZ,insG,yjhB,yjhC,ythA,yjhD,yjhE,insO,insI‑3,insO,insO,yjhV,fecE,fecD,fecC,fecB,fecA,fecR,fecI,insA‑7,yjhU,yjhF,yjhG,yjhH,yjhI,sgcR,sgcE,sgcA,ryjB,sgcQ,sgcC,sgcB,sgcX,yjhP,yjhQ,topAI,yjhZ,yjhR,nanS,nanM,nanC,fimB,fimE,fimA,fimI,fimC,fimD,fimF,fimG,fimH |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4496675 | 0 (0.000) | 54 (1.470) | 37/96 | 0.0 | 100% | intergenic (+186/‑75) | leuX/intB | tRNA‑Leu/KpLE2 phage‑like element; putative integrase |
| ? | NC_000913 | 4549712 = | 0 (0.000) | intergenic (+2/+241) | fimH/gntP | type 1 fimbriae D‑mannose specific adhesin/fructuronate transporter | |||||
GGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4496629‑4496675‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCT > NC_000913/4549712‑4549759 GGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGA > 1:1066316/1‑49GGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGA > 1:2592116/1‑49 TATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAAT > 1:2576360/1‑50 TTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCA < 1:2748284/50‑1 TTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATC < 1:1649978/49‑1 CCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAG > 1:95141/1‑50 CGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAG < 1:2043549/49‑1 GGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGA > 1:2716389/1‑50 TTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACA > 1:2239652/1‑50 GATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTG < 1:515357/50‑1 GATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTG < 1:793979/50‑1 ATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGC > 1:15228/1‑50 ATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGC < 1:2066203/50‑1 TAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCT < 1:127200/50‑1 TAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCT < 1:2192480/50‑1 ATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAA > 1:364080/1‑50 ATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAA > 1:1282603/1‑50 ATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTA < 1:1909914/49‑1 CTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGC > 1:2653543/1‑50 CTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATG < 1:763165/49‑1 TGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTG > 1:1116506/1‑50 TACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGT < 1:1266878/50‑1 TACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGG > 1:2752941/1‑49 ACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTA > 1:1893554/1‑50 ACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTA > 1:1627283/1‑50 CCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTAC < 1:1912655/50‑1 CCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTAC < 1:2289675/50‑1 CCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTAC < 1:1354859/50‑1 CAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACG < 1:2069630/50‑1 AACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACG > 1:2492322/1‑49 CAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAA > 1:86160/1‑50 AGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAAT < 1:2715530/50‑1 AGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAAT < 1:11908/50‑1 GGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATAT < 1:1808612/50‑1 GGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATAT < 1:2544126/50‑1 GAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATAT > 1:1518279/1‑49 AGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTA > 1:1229818/1‑50 AGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTA < 1:172145/50‑1 GGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTAC < 1:1786979/50‑1 GGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTAC > 1:2774424/1‑50 GGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTAC > 1:861985/1‑50 GGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTAC < 1:1962695/50‑1 GGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTAC < 1:178587/50‑1 GGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACC < 1:991527/50‑1 GAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCT > 1:236665/1‑50 AATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTG < 1:191075/50‑1 AATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTG < 1:1520052/50‑1 ATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTG > 1:330114/1‑49 ATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTG > 1:2187588/1‑49 TACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAA < 1:838098/50‑1 TACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAA < 1:1686147/50‑1 TACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAA < 1:1022904/50‑1 TACGAGAAATCACAGGACAGTGCTAATGCTGGTACGCAATATTACCTGAA < 1:302839/50‑1 GAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCT < 1:2535921/50‑1 GGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4496629‑4496675‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCT > NC_000913/4549712‑4549759 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |