| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,496,676 | Δ53,036 bp | intB–fimH | 54 genes intB, insC‑6, insD‑6, yjgX, yjgZ, insG, yjhB, yjhC, ythA, yjhD, yjhE, insO, insI‑3, insO, insO, yjhV, fecE, fecD, fecC, fecB, fecA, fecR, fecI, insA‑7, yjhU, yjhF, yjhG, yjhH, yjhI, sgcR, sgcE, sgcA, ryjB, sgcQ, sgcC, sgcB, sgcX, yjhP, yjhQ, topAI, yjhZ, yjhR, nanS, nanM, nanC, fimB, fimE, fimA, fimI, fimC, fimD, fimF, fimG, fimH |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4496676 | 4549711 | 53036 | 54 [0] | [0] 55 | intB–fimH | intB,insC‑6,insD‑6,yjgX,yjgZ,insG,yjhB,yjhC,ythA,yjhD,yjhE,insO,insI‑3,insO,insO,yjhV,fecE,fecD,fecC,fecB,fecA,fecR,fecI,insA‑7,yjhU,yjhF,yjhG,yjhH,yjhI,sgcR,sgcE,sgcA,ryjB,sgcQ,sgcC,sgcB,sgcX,yjhP,yjhQ,topAI,yjhZ,yjhR,nanS,nanM,nanC,fimB,fimE,fimA,fimI,fimC,fimD,fimF,fimG,fimH |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4496675 | 0 (0.000) | 54 (1.470) | 37/96 | 0.0 | 100% | intergenic (+186/‑75) | leuX/intB | tRNA‑Leu/KpLE2 phage‑like element; putative integrase |
| ? | NC_000913 | 4549712 = | 0 (0.000) | intergenic (+2/+241) | fimH/gntP | type 1 fimbriae D‑mannose specific adhesin/fructuronate transporter | |||||
GGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGATGGCATTAACAGATATCAAAGTCAGAGCAGCCAAGCCAACGGATAAGC > NC_000913/4496629‑4496723 | ggTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAga > 1:1066316‑M1/1‑47 (MQ=255)ggTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAga > 1:2592116‑M1/1‑47 (MQ=255) tATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaat > 1:2576360‑M1/1‑45 (MQ=255) tttCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatca < 1:2748284‑M1/50‑8 (MQ=255) tttCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatc < 1:1649978‑M1/49‑7 (MQ=255) ccGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacag > 1:95141‑M1/1‑40 (MQ=255) cGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacag < 1:2043549‑M1/49‑11 (MQ=255) ggTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacagga > 1:2716389‑M1/1‑38 (MQ=255) ttCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggaca > 1:2239652‑M1/1‑36 (MQ=255) gATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattg < 1:515357‑M1/50‑18 (MQ=255) gATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattg < 1:793979‑M1/50‑18 (MQ=255) aTAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattgc > 1:15228‑M1/1‑32 (MQ=255) aTAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattgc < 1:2066203‑M1/50‑19 (MQ=255) tAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattgct < 1:127200‑M1/50‑20 (MQ=255) tAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattgct < 1:2192480‑M1/50‑20 (MQ=255) aTGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattgctaa > 1:364080‑M1/1‑29 (MQ=255) aTGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattgctaa > 1:1282603‑M1/1‑29 (MQ=255) aTGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattgcta < 1:1909914‑M1/49‑21 (MQ=255) cTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgc > 1:2653543‑M1/1‑26 (MQ=255) cTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattgctaatg < 1:763165‑M1/49‑24 (MQ=255) tGTACCAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgctg > 1:1116506‑M1/1‑24 (MQ=255) tACCAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgctggt < 1:1266878‑M1/50‑29 (MQ=255) tACCAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgctgg > 1:2752941‑M1/1‑22 (MQ=255) aCCAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgctggta > 1:1893554‑M1/1‑21 (MQ=255) aCCAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgctggta > 1:1627283‑M1/1‑21 (MQ=255) ccAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgctggtac < 1:1912655‑M1/50‑31 (MQ=255) ccAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgctggtac < 1:2289675‑M1/50‑31 (MQ=255) ccAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgctggtac < 1:1354859‑M1/50‑31 (MQ=255) cAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgctggtacg < 1:2069630‑M1/50‑32 (MQ=255) aaCAGGGAGGGAATACGAgaaatcacaggacattgctaatgctggtacg > 1:2492322‑M1/1‑18 (MQ=255) cAGGGAGGGAATACGAgaaatcacaggacattgctaatgctggtacgcaa > 1:86160‑M1/1‑16 (MQ=255) agggagggAATACGAgaaatcacaggacattgctaatgctggtacgcaat < 1:2715530‑M1/50‑36 (MQ=255) agggagggAATACGAgaaatcacaggacattgctaatgctggtacgcaat < 1:11908‑M1/50‑36 (MQ=255) ggagggaATACGAgaaatcacaggacattgctaatgctggtacgcaatat < 1:1808612‑M1/50‑38 (MQ=255) ggagggaATACGAgaaatcacaggacattgctaatgctggtacgcaatat < 1:2544126‑M1/50‑38 (MQ=255) gagggaATACGAgaaatcacaggacattgctaatgctggtacgcaatat > 1:1518279‑M1/1‑12 (MQ=255) agggaATACGAgaaatcacaggacattgctaatgctggtacgcaatatta > 1:1229818‑M1/1‑11 (MQ=255) agggaATACGAgaaatcacaggacattgctaatgctggtacgcaatatta < 1:172145‑M1/50‑40 (MQ=255) gggaATACGAgaaatcacaggacattgctaatgctggtacgcaatattac < 1:1786979‑M1/50‑41 (MQ=255) gggaATACGAgaaatcacaggacattgctaatgctggtacgcaatattac > 1:2774424‑M1/1‑10 (MQ=255) gggaATACGAgaaatcacaggacattgctaatgctggtacgcaatattac > 1:861985‑M1/1‑10 (MQ=255) gggaATACGAgaaatcacaggacattgctaatgctggtacgcaatattac < 1:1962695‑M1/50‑41 (MQ=255) gggaATACGAgaaatcacaggacattgctaatgctggtacgcaatattac < 1:178587‑M1/50‑41 (MQ=255) ggaATACGAgaaatcacaggacattgctaatgctggtacgcaatattacc < 1:991527‑M1/50‑42 (MQ=255) gaATACGAgaaatcacaggacattgctaatgctggtacgcaatattacct > 1:236665‑M1/1‑8 (MQ=255) aaTACGAgaaatcacaggacattgctaatgctggtacgcaatattacctg < 1:191075‑M1/50‑44 (MQ=255) aaTACGAgaaatcacaggacattgctaatgctggtacgcaatattacctg < 1:1520052‑M1/50‑44 (MQ=255) aTACGAgaaatcacaggacattgctaatgctggtacgcaatattacctg > 1:330114‑M1/1‑6 (MQ=255) aTACGAgaaatcacaggacattgctaatgctggtacgcaatattacctg > 1:2187588‑M1/1‑6 (MQ=255) tACGAgaaatcacaggacattgctaatgctggtacgcaatattacctgaa < 1:838098‑M1/50‑46 (MQ=255) tACGAgaaatcacaggacattgctaatgctggtacgcaatattacctgaa < 1:1686147‑M1/50‑46 (MQ=255) tACGAgaaatcacaggacattgctaatgctggtacgcaatattacctgaa < 1:1022904‑M1/50‑46 (MQ=255) tACGAgaaatcacaggacagtgctaatgctggtacgcaatattacctgaa < 1:302839‑M1/50‑46 (MQ=255) gagaaatcacaggacattgctaatgctggtacgcaatattacctgaagct < 1:2535921‑M1/50‑49 (MQ=255) | GGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGATGGCATTAACAGATATCAAAGTCAGAGCAGCCAAGCCAACGGATAAGC > NC_000913/4496629‑4496723 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |