| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 167,484 | Δ5,964 bp | [fhuA]–fhuB | [fhuA], fhuC, fhuD, fhuB | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 167484 | 173447 | 5964 | 49 [0] | [0] 50 | [fhuA]–fhuB | [fhuA],fhuC,fhuD,fhuB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 167483 | 0 (0.000) | 49 (1.310) | 37/98 | 0.0 | 100% | intergenic (+219/‑1) | mrcB/fhuA | peptidoglycan glycosyltransferase/peptidoglycan DD‑transpeptidase MrcB/ferrichrome outer membrane transporter/phage receptor |
| ? | NC_000913 | 173448 = | 0 (0.000) | intergenic (+4/+154) | fhuB/hemL | iron(III) hydroxamate ABC transporter membrane subunit/glutamate‑1‑semialdehyde aminotransferase | |||||
TAATCATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAATGGCGCGTTCCAAAACTGCTCAGCCAAAACACTCACTGCGTAAAATC > NC_000913/167435‑167531 | tAATCATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAt < 1:314773‑M1/50‑2 (MQ=255) aTCATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttc < 1:2395423‑M1/50‑4 (MQ=255) aTCATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttc > 1:1275352‑M1/1‑47 (MQ=255) tCATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttcc < 1:1929200‑M1/50‑5 (MQ=255) tCATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttc > 1:1692686‑M1/1‑46 (MQ=255) ttCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccata > 1:693083‑M1/1‑43 (MQ=255) ttCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccata < 1:745008‑M1/50‑8 (MQ=255) ttCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccata < 1:710117‑M1/50‑8 (MQ=255) tctcGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccata > 1:1190388‑M1/1‑42 (MQ=255) ctcGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccatat < 1:1472260‑M1/49‑9 (MQ=255) ctcGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccatat < 1:560261‑M1/49‑9 (MQ=255) ctcGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccatat < 1:734138‑M1/49‑9 (MQ=255) gTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccatataac < 1:1155770‑M1/49‑12 (MQ=255) tttACGTTATCATTCACTTTACATCAGAGATATACCAttccatataacgg < 1:326160‑M1/50‑14 (MQ=255) tttACGTTATCATTCACTTTACATCAGAGATATACCAttccatataacgg < 1:1434060‑M1/50‑14 (MQ=255) tttACGTTATCATTCACTTTACATCAGAGATATACCAttccatataacgg < 1:2324366‑M1/50‑14 (MQ=255) tttACGTTATCATTCACTTTACATCAGAGATATACCAttccatataacgg > 1:2178806‑M1/1‑37 (MQ=255) gTTATCATTCACTTTACATCAGAGATATACCAttccatataacggccctg > 1:1424584‑M1/1‑32 (MQ=255) gTTATCATTCACTTTACATCAGAGATATACCAttccatataacggccctg > 1:79612‑M1/1‑32 (MQ=255) gTTATCATTCACTTTACATCAGAGATATACCAttccatataacggccctg < 1:2529079‑M1/50‑19 (MQ=255) ttATCATTCACTTTACATCAGAGATATACCAttccatataacggccctgt < 1:386472‑M1/50‑20 (MQ=255) ttATCATTCACTTTACATCAGAGATATACCAttccatataacggccctgt < 1:1359119‑M1/50‑20 (MQ=255) ttATCATTCACTTTACATCAGAGATATACCAttccatataacggccctg > 1:208619‑M1/1‑31 (MQ=255) aTCATTCACTTTACATCAGAGATATACCAttccatataacggccctgtac > 1:822311‑M1/1‑29 (MQ=255) aTCATTCACTTTACATCAGAGATATACCAttccatataacggccctgtac > 1:1688284‑M1/1‑29 (MQ=255) tCATTCACTTTACATCAGAGATATACCAttccatataacggccctgtacg < 1:1943769‑M1/50‑23 (MQ=255) tCATTCACTTTACATCAGAGATATACCAttccatataacggccctgtac < 1:854417‑M1/49‑22 (MQ=255) tCATTCACTTTACATCAGAGATATACCAttccatataacggccctgtac < 1:2082984‑M1/49‑22 (MQ=255) cATTCACTTTACATCAGAGATATACCAttccatataacggccctgtacgc > 1:410145‑M1/1‑27 (MQ=255) aTTCACTTTACATCAGAGATATACCAttccatataacggccctgtacgcc > 1:360876‑M1/1‑26 (MQ=255) ttCACTTTACATCAGAGATATACCAttccatataacggccctgtacgcct > 1:1372035‑M1/1‑25 (MQ=255) tCACTTTACATCAGAGATATACCAttccatataacggccctgtacgcctg > 1:1828355‑M1/1‑24 (MQ=255) cACTTTACATCAGAGATATACCAttccatataacggccctgtacgcctg > 1:283749‑M1/1‑23 (MQ=255) aCTTTACATCAGAGATATACCAttccatataacggccctgtacgcctgga < 1:495500‑M1/50‑29 (MQ=255) tttACATCAGAGATATACCAttccatataacggccctgtacgcctggacg > 1:2319112‑M1/1‑20 (MQ=255) tACATCAGAGATATACCAttccatataacggccctgtacgcctggacgga > 1:36191‑M1/1‑18 (MQ=255) cATCAGAGATATACCAttccatataacggccctgtacgcctggacggata < 1:606347‑M1/50‑35 (MQ=255) cATCAGAGATATACCAttccatataacggccctgtacgcctggacggata < 1:159698‑M1/50‑35 (MQ=255) cATCAGAGATATACCAttccatataacggccctgtacgcctggacggat < 1:2218473‑M1/49‑34 (MQ=255) cATCAGAGATATACCAttccatataacggccctgtacgcctggacggat < 1:2195786‑M1/49‑34 (MQ=255) aTCAGAGATATACCAttccatataacggccctgtacgcctggacggata > 1:598383‑M1/1‑15 (MQ=255) cAGAGATATACCAttccatataacggccctgtacgcctggacggataaag > 1:2017384‑M1/1‑13 (MQ=255) cAGAGATATACCAttccatataacggccctgtacgcctggacggataaag > 1:797677‑M1/1‑13 (MQ=255) atatACCAttccatataacggccctgtacgcctggacggataaagcgtt > 1:422850‑M1/1‑8 (MQ=255) ataCCAttccatataacggccctgtacgcctggacggataaagcgtttac > 1:1091676‑M1/1‑6 (MQ=255) taCCAttccatataacggccctgtacgcctggacggataaagcgtttacg > 1:1933297‑M1/1‑5 (MQ=255) taCCAttccatataacggccctgtacgcctggacggataaagcgtttac < 1:1167749‑M1/49‑45 (MQ=255) aCCAttccatataacggccctgtacgcctggacggataaagcgtttacgc > 1:769645‑M1/1‑4 (MQ=255) cAttccatataacggccctgtacgcctggacggataaagcgtttacgcga > 1:1132325‑M1/1‑2 (MQ=255) | TAATCATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAATGGCGCGTTCCAAAACTGCTCAGCCAAAACACTCACTGCGTAAAATC > NC_000913/167435‑167531 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |