| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 565,055 | Δ21,054 bp | [intD]–ompT | 37 genes [intD], xisD, exoD, renD, insE‑3, insF‑3, renD, emrE, ylcJ, ybcK, ybcL, ybcM, ylcH, ybcN, ninE, ybcO, rusA, ylcG, ybcQ, nmpC, insH‑2, nmpC, essD, rrrD, rzpD, rzoD, borD, ybcV, ybcW, ylcI, nohD, aaaD, tfaD, ybcY, tfaX, appY, ompT |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 565055 | 586108 | 21054 | 52 [0] | [0] 52 | [intD]–ompT | [intD],xisD,exoD,renD,insE‑3,insF‑3,renD,emrE,ylcJ,ybcK,ybcL,ybcM,ylcH,ybcN,ninE,ybcO,rusA,ylcG,ybcQ,nmpC,insH‑2,nmpC,essD,rrrD,rzpD,rzoD,borD,ybcV,ybcW,ylcI,nohD,aaaD,tfaD,ybcY,tfaX,appY,ompT |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 565054 | 0 (0.000) | 42 (1.250) | 35/88 | 0.0 | 100% | coding (925/1164 nt) | intD | DLP12 prophage; putative integrase |
| ? | NC_000913 | 586109 = | 0 (0.000) | intergenic (‑476/+38) | ompT/envY | outer membrane protease VII (outer membrane protein 3b)/DNA‑binding transcriptional activator EnvY | |||||
ATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGATAGCCATGATGTCTTGCTGTCGATG > NC_000913/565005‑565103 | aTCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTC > 1:652329‑M1/1‑50 (MQ=255) agccagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCct > 1:519154‑M1/1‑47 (MQ=255) agccagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCct < 1:581409‑M1/49‑3 (MQ=255) ccagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcat < 1:991025‑M1/50‑6 (MQ=255) cagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatt < 1:354765‑M1/50‑7 (MQ=255) agcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatt > 1:2087550‑M1/1‑43 (MQ=255) cTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttat < 1:19732‑M1/50‑10 (MQ=255) cTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttat < 1:755154‑M1/50‑10 (MQ=255) gCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcc > 1:2000863‑M1/1‑38 (MQ=255) gCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatg < 1:2601430‑M1/48‑11 (MQ=255) ccAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccg > 1:2238398‑M1/1‑36 (MQ=255) ccAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccg < 1:2095026‑M1/50‑15 (MQ=255) ccAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccg < 1:1262049‑M1/50‑15 (MQ=255) cAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgt < 1:2530146‑M1/50‑16 (MQ=255) aGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtc > 1:1328098‑M1/1‑34 (MQ=255) ggTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtct > 1:2040889‑M1/1‑33 (MQ=255) tgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttat < 1:1620066‑M1/49‑21 (MQ=255) tCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccg < 1:443176‑M1/50‑24 (MQ=255) cTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgt > 1:1846063‑M1/1‑26 (MQ=255) tGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtt > 1:1486079‑M1/1‑25 (MQ=255) aGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttc > 1:1901065‑M1/1‑23 (MQ=255) aGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgttt < 1:667486‑M1/49‑27 (MQ=255) aGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgt < 1:490131‑M1/47‑25 (MQ=255) gTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccg > 1:747773‑M1/1‑21 (MQ=255) tCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgc < 1:2404256‑M1/50‑31 (MQ=255) tCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgc > 1:259627‑M1/1‑20 (MQ=255) cATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgct > 1:634178‑M1/1‑19 (MQ=255) aTGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgctt < 1:1497989‑M1/50‑33 (MQ=255) aTGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgctt < 1:2741587‑M1/50‑33 (MQ=255) aTGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgctt > 1:2420371‑M1/1‑18 (MQ=255) aTGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgct < 1:2764256‑M1/49‑32 (MQ=255) tGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgcttt < 1:1135260‑M1/50‑34 (MQ=255) tGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgcttt < 1:486233‑M1/50‑34 (MQ=255) tGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgcttt < 1:2743377‑M1/50‑34 (MQ=255) tGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgcttt < 1:1143669‑M1/50‑34 (MQ=255) gAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgc > 1:179255‑M1/1‑15 (MQ=255) aaaCGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgcc < 1:12529‑M1/50‑37 (MQ=255) aaaCGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgcc > 1:1289304‑M1/1‑14 (MQ=255) cGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgccctt > 1:1872796‑M1/1‑11 (MQ=255) ggAAATCTTCctcatttatgcccgtcttatccgtttccgctttgcccttc < 1:2367741‑M1/50‑41 (MQ=255) ggAAATCTTCctcatttatgcccgtcttatccgtttccgctttgccctt > 1:216506‑M1/1‑10 (MQ=255) ggAAATCTTCctcatttatgcccgtcttatccgtttccgctttgccctt > 1:577614‑M1/1‑10 (MQ=255) aTCTTCctcatttatgcccgtcttatccgtttccgctttgcccttcacca > 1:1986208‑M1/1‑6 (MQ=255) cTTCctcatttatgcccgtcttatccgtttccgctttgcccttcaccaca > 1:1084780‑M1/1‑4 (MQ=255) cTTCctcatttatgcccgtcttatccgtttccgctttgcccttcaccaca > 1:426245‑M1/1‑4 (MQ=255) ttCctcatttatgcccgtcttatccgtttccgctttgcccttcaccacat > 1:2184351‑M1/1‑3 (MQ=255) tCctcatttatgcccgtcttatccgtttccgctttgcccttcaccacat > 1:1270932‑M1/1‑2 (MQ=255) cctcatttatgcccgtcttatccgtttccgctttgcccttcaccacatca > 1:1532562‑M1/1‑1 (MQ=255) cctcatttatgcccgtcttatccgtttccgctttgcccttcaccacatca > 1:2485914‑M1/1‑1 (MQ=255) cctcatttatgcccgtcttatccgtttccgctttgcccttcaccacatc < 1:1731717‑M1/49‑49 (MQ=255) cctcatttatgcccgtcttatccgtttccgctttgcccttcaccacatc < 1:1435675‑M1/49‑49 (MQ=255) cctcatttatgcccgtcttatccgtttccgctttgcccttcaccacatc < 1:1765191‑M1/49‑49 (MQ=255) | ATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGATAGCCATGATGTCTTGCTGTCGATG > NC_000913/565005‑565103 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |