| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 565,055 | Δ21,054 bp | [intD]–ompT | 37 genes [intD], xisD, exoD, renD, insE‑3, insF‑3, renD, emrE, ylcJ, ybcK, ybcL, ybcM, ylcH, ybcN, ninE, ybcO, rusA, ylcG, ybcQ, nmpC, insH‑2, nmpC, essD, rrrD, rzpD, rzoD, borD, ybcV, ybcW, ylcI, nohD, aaaD, tfaD, ybcY, tfaX, appY, ompT |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 565055 | 586108 | 21054 | 52 [0] | [0] 52 | [intD]–ompT | [intD],xisD,exoD,renD,insE‑3,insF‑3,renD,emrE,ylcJ,ybcK,ybcL,ybcM,ylcH,ybcN,ninE,ybcO,rusA,ylcG,ybcQ,nmpC,insH‑2,nmpC,essD,rrrD,rzpD,rzoD,borD,ybcV,ybcW,ylcI,nohD,aaaD,tfaD,ybcY,tfaX,appY,ompT |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 565054 | 0 (0.000) | 42 (1.250) | 35/88 | 0.0 | 100% | coding (925/1164 nt) | intD | DLP12 prophage; putative integrase |
| ? | NC_000913 | 586109 = | 0 (0.000) | intergenic (‑476/+38) | ompT/envY | outer membrane protease VII (outer membrane protein 3b)/DNA‑binding transcriptional activator EnvY | |||||
AAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTTCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACATCA > NC_000913/586062‑586157 | agccagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCt < 1:581409‑M2/2‑1 (MQ=255)agccagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCt > 1:519154‑M2/48‑49 (MQ=255) ccagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCAt < 1:991025‑M2/5‑1 (MQ=255) cagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCAtt < 1:354765‑M2/6‑1 (MQ=255) agcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCAtt > 1:2087550‑M2/44‑49 (MQ=255) cttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTAt < 1:755154‑M2/9‑1 (MQ=255) cttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTAt < 1:19732‑M2/9‑1 (MQ=255) gcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATg < 1:2601430‑M2/10‑1 (MQ=255) gcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGcc > 1:2000863‑M2/39‑50 (MQ=255) ccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCg < 1:1262049‑M2/14‑1 (MQ=255) ccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCg > 1:2238398‑M2/37‑50 (MQ=255) ccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCg < 1:2095026‑M2/14‑1 (MQ=255) caggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGt < 1:2530146‑M2/15‑1 (MQ=255) aggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTc > 1:1328098‑M2/35‑50 (MQ=255) ggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCt > 1:2040889‑M2/34‑50 (MQ=255) tgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTAt < 1:1620066‑M2/20‑1 (MQ=255) tctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCg < 1:443176‑M2/23‑1 (MQ=255) ctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGt > 1:1846063‑M2/27‑50 (MQ=255) tgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGtt > 1:1486079‑M2/26‑50 (MQ=255) aggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGttt < 1:667486‑M2/26‑1 (MQ=255) aggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGt < 1:490131‑M2/24‑1 (MQ=255) aggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTc > 1:1901065‑M2/24‑50 (MQ=255) gtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCg > 1:747773‑M2/22‑50 (MQ=255) tcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGc > 1:259627‑M2/21‑50 (MQ=255) tcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGc < 1:2404256‑M2/30‑1 (MQ=255) catggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCt > 1:634178‑M2/20‑50 (MQ=255) atggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCtt < 1:1497989‑M2/32‑1 (MQ=255) atggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCtt < 1:2741587‑M2/32‑1 (MQ=255) atggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCtt > 1:2420371‑M2/19‑50 (MQ=255) atggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCt < 1:2764256‑M2/31‑1 (MQ=255) tggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCttt < 1:1135260‑M2/33‑1 (MQ=255) tggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCttt < 1:2743377‑M2/33‑1 (MQ=255) tggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCttt < 1:486233‑M2/33‑1 (MQ=255) tggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCttt < 1:1143669‑M2/33‑1 (MQ=255) gaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGc > 1:179255‑M2/16‑50 (MQ=255) aaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGcc < 1:12529‑M2/36‑1 (MQ=255) aaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGcc > 1:1289304‑M2/15‑50 (MQ=255) cggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCtt > 1:1872796‑M2/12‑50 (MQ=255) ggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCtt > 1:216506‑M2/11‑49 (MQ=255) ggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCtt > 1:577614‑M2/11‑49 (MQ=255) ggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTc < 1:2367741‑M2/40‑1 (MQ=255) atcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTcacca > 1:1986208‑M2/7‑50 (MQ=255) cttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACcaca > 1:1084780‑M2/5‑50 (MQ=255) cttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACcaca > 1:426245‑M2/5‑50 (MQ=255) ttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACAt > 1:2184351‑M2/4‑50 (MQ=255) tcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACAt > 1:1270932‑M2/3‑49 (MQ=255) cCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACATc < 1:1731717‑M2/48‑1 (MQ=255) cCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACATc < 1:1435675‑M2/48‑1 (MQ=255) cCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACATc < 1:1765191‑M2/48‑1 (MQ=255) cCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACATCa > 1:1532562‑M2/2‑50 (MQ=255) cCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACATCa > 1:2485914‑M2/2‑50 (MQ=255) cTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACATCa < 1:51504/49‑1 (MQ=255) | AAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTTCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACATCA > NC_000913/586062‑586157 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |