New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3801110 (0.000)22 (0.830)
+CGAGAT		 18/86 0.2 64.2% coding (732/774 nt) yaiO outer membrane protein YaiO
?NC_000913 4070444 = 28 (0.920)intergenic (‑43/+71) yihR/yihS putative aldose 1‑epimerase YihR/sulfoquinovose isomerase

TCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/380069‑380111
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAG  >  NC_000913/4070444‑4070482
                                           ||||||                                       
TCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATG                                        >  1:2364513/1‑50
 CAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATG                                        >  1:1697561/1‑49
  AGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGA                                      >  1:159338/1‑50
    AATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACG                                    >  1:752070/1‑50
    AATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACG                                    <  1:1481071/50‑1
          CAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCCC                              <  1:2201215/50‑1
                AGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCCCTCGCCC                        >  1:2078592/1‑50
                 GACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCCCTCGCCCC                       <  1:501216/50‑1
                   CGGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCct                     >  1:1476150/1‑48
                    GGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTT                    >  1:1264525/1‑50
                     GGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTG                   <  1:2642827/50‑1
                          CAAGTTGCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGGGAG              <  1:1143684/50‑1
                          CAAGTTGCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGGG                <  1:1094846/48‑1
                          CAAGTTGCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGG                 >  1:2187642/1‑47
                             GTTGCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGGGAGAGG           >  1:1577121/1‑50
                               TGCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGT         >  1:3813/1‑50
                                GCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGT         >  1:11692/1‑49
                                 CAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTA       <  1:175924/50‑1
                                   GACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGG     <  1:1379725/50‑1
                                    ACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGG    <  1:2089348/50‑1
                                      CGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGtg  <  1:339808/50‑3
                                       GTTACGAGATGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGt   >  1:978776/1‑47
                                           ||||||                                       
TCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/380069‑380111
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAG  >  NC_000913/4070444‑4070482

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.