| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 380111 | 0 (0.000) | 22 (0.830) +CGAGAT |
18/86 | 0.2 | 64.2% | coding (732/774 nt) | yaiO | outer membrane protein YaiO |
| ? | NC_000913 | 4070444 = | 28 (0.920) | intergenic (‑43/+71) | yihR/yihS | putative aldose 1‑epimerase YihR/sulfoquinovose isomerase | |||||
ACGACATACAGCCTCCCGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACC > NC_000913/4070395‑4070493 | tcagaatttccaggtcagacgggctgcaagttgcagaccgttacgagatg > 1:2364513‑M2/50‑50 (MQ=255) cagaatttccaggtcagacgggctgcaagttgcagaccgttacgagatg > 1:1697561‑M2/49‑49 (MQ=255) cGACATACAGCCTCCCGTGAGGCTGATGTCAAACCCAAAAACTGCACCgg < 1:1494020/50‑1 (MQ=255) cGACATACAGCCTCCCGTGAGGCTGATGTCAAACCCAAAAACTGCACCg > 1:635788/1‑49 (MQ=255) cGACATACAGCCTCCCGTGAGGCTGATGTCAAACCCAAAAACTGCACCg > 1:1608265/1‑49 (MQ=255) agaatttccaggtcagacgggctgcaagttgcagaccgttacgagatGGa > 1:159338‑M2/48‑50 (MQ=255) aCATACAGCCTCCCGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGAc < 1:1334595/50‑1 (MQ=255) aCATACAGCCTCCCGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGAc > 1:348369/1‑50 (MQ=255) aatttccaggtcagacgggctgcaagttgcagaccgttacgagatGGACg > 1:752070‑M2/46‑50 (MQ=255) aatttccaggtcagacgggctgcaagttgcagaccgttacgagatGGACg < 1:1481071‑M2/5‑1 (MQ=255) aTACAGCCTCCCGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGACgg > 1:875317/1‑50 (MQ=255) tACAGCCTCCCGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGACGGt < 1:1000739/50‑1 (MQ=255) tACAGCCTCCCGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGACGGt < 1:2698392/50‑1 (MQ=255) aGCCTCCCGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTccc > 1:130297/1‑50 (MQ=255) caggtcagacgggctgcaagttgcagaccgttacgagatGGACGGTcccc < 1:2201215‑M2/11‑1 (MQ=255) ccTCCCGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCt < 1:2687188/50‑1 (MQ=255) cTCCCGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTc < 1:578305/50‑1 (MQ=255) tCCCGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCg > 1:1621904/1‑50 (MQ=255) agacgggctgcaagttgcagaccgttacgagatGGACGGTCCCCTCGccc > 1:2078592‑M2/34‑50 (MQ=255) gacgggctgcaagttgcagaccgttacgagatGGACGGTCCCCTCGcccc < 1:501216‑M2/18‑1 (MQ=255) gTGAGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGcccc < 1:2327815/50‑1 (MQ=255) cgggctgcaagttgcagaccgttacgagatGGACGGTCCCCTcgccccct > 1:1476150‑M2/31‑48 (MQ=255) gggctgcaagttgcagaccgttacgagatGGACGGTCCCCTCGCCCCctt > 1:1264525‑M2/30‑50 (MQ=255) aGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCttt > 1:1991838/1‑50 (MQ=255) ggctgcaagttgcagaccgttacgagatGGACGGTCCCCTCGCCCCCTTg < 1:2642827‑M2/22‑1 (MQ=255) ggCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTg < 1:2037300/50‑1 (MQ=255) tGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTggg > 1:1889791/1‑49 (MQ=255) tGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTggg > 1:1918929/1‑49 (MQ=255) caagttgcagaccgttacgagatGGACGGTCCCCTCGCCCCCTTgggg < 1:1094846‑M2/25‑1 (MQ=255) caagttgcagaccgttacgagatGGACGGTCCCCTCGCCCCCTTggg > 1:2187642‑M2/24‑47 (MQ=255) caagttgcagaccgttacgagatGGACGGTCCCCTCGCCCCCTTGGGgag < 1:1143684‑M2/27‑1 (MQ=255) tCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGagag < 1:2132906/49‑1 (MQ=255) gttgcagaccgttacgagatGGACGGTCCCCTCGCCCCCTTGGGGAGAgg > 1:1577121‑M2/21‑50 (MQ=255) tgcagaccgttacgagatGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGt > 1:3813‑M2/19‑50 (MQ=255) gcagaccgttacgagatGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGt > 1:11692‑M2/18‑49 (MQ=255) cagaccgttacgagatGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTa < 1:175924‑M2/34‑1 (MQ=255) aCCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGt > 1:2401358/1‑48 (MQ=255) gaccgttacgagatGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTAgg < 1:1379725‑M2/36‑1 (MQ=255) accgttacgagatGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTAggg < 1:2089348‑M2/37‑1 (MQ=255) aaaaaCTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAgg > 1:1842193/1‑48 (MQ=255) cgttacgagatGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTtagggtg < 1:339808‑M2/39‑3 (MQ=255) gttacgagatGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTagggt > 1:978776‑M2/11‑47 (MQ=255) aCTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAgg > 1:292514/1‑50 (MQ=255) aCTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAgg > 1:1952222/1‑50 (MQ=255) tGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAggg > 1:2615148/1‑49 (MQ=255) gCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAgggg > 1:185724/1‑49 (MQ=255) cACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAgggg < 1:2350952/48‑1 (MQ=255) cACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAgggg < 1:990530/48‑1 (MQ=255) cccGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGaaa < 1:525608/49‑1 (MQ=255) aCCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGaaa < 1:1874673/50‑1 (MQ=255) ggACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAAcc > 1:2356171/1‑50 (MQ=255) | ACGACATACAGCCTCCCGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACC > NC_000913/4070395‑4070493 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |