| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,388,889 | Δ9,734 bp | ycjG–[uspE] | ycjG, mpaA, ymjC, ymjD, ycjY, pgrR, mppA, ynaI, insH‑4, ynaJ, [uspE] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1388889 | 1398622 | 9734 | 22 [0] | [0] 22 | ycjG–[uspE] | ycjG,mpaA,ymjC,ymjD,ycjY,pgrR,mppA,ynaI,insH‑4,ynaJ,[uspE] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1388888 | 0 (0.000) | 22 (0.740) | 20/96 | 0.2 | 100% | intergenic (‑77/‑42) | tpx/ycjG | lipid hydroperoxide peroxidase/L‑Ala‑D/L‑Glu epimerase |
| ? | NC_000913 | 1398623 = | 0 (0.000) | intergenic (‑1/+151) | uspE/fnr | universal stress protein with a role cellular motility/DNA‑binding transcriptional dual regulator FNR | |||||
ACGTCACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1388840‑1388888‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGAT > NC_000913/1398623‑1398670 ACGTCACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTA < 1:1124640/50‑1 GTCACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTA > 1:2543995/1‑48 CACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTACAGG > 1:243539/1‑50 TAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCC > 1:1341903/1‑50 AGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCCT > 1:456516/1‑50 TTATGCTAACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTA > 1:2322715/1‑49 TAACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAAC > 1:332705/1‑50 TAACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAAC > 1:53145/1‑50 TGTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGT > 1:2395578/1‑49 AATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACG > 1:2292467/1‑50 AATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACG > 1:1465471/1‑50 ATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACGC < 1:1711378/50‑1 AACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAG > 1:2008434/1‑50 ACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAGT > 1:2286214/1‑50 ACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTT > 1:1062839/1‑50 ACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTT < 1:496020/50‑1 AGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGT < 1:1905942/50‑1 CGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAA < 1:2183980/50‑1 GCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAA < 1:2410832/50‑1 CTATTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAA > 1:871992/1‑48 ATTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAA > 1:36486/1‑46 TTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGAT < 1:1352402/50‑1 ACGTCACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1388840‑1388888‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGAT > NC_000913/1398623‑1398670 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |