| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,388,889 | Δ9,734 bp | ycjG–[uspE] | ycjG, mpaA, ymjC, ymjD, ycjY, pgrR, mppA, ynaI, insH‑4, ynaJ, [uspE] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1388889 | 1398622 | 9734 | 22 [0] | [0] 22 | ycjG–[uspE] | ycjG,mpaA,ymjC,ymjD,ycjY,pgrR,mppA,ynaI,insH‑4,ynaJ,[uspE] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1388888 | 0 (0.000) | 22 (0.740) | 20/96 | 0.2 | 100% | intergenic (‑77/‑42) | tpx/ycjG | lipid hydroperoxide peroxidase/L‑Ala‑D/L‑Glu epimerase |
| ? | NC_000913 | 1398623 = | 0 (0.000) | intergenic (‑1/+151) | uspE/fnr | universal stress protein with a role cellular motility/DNA‑binding transcriptional dual regulator FNR | |||||
CGTCCTGGTTAGGATCGATAACAACGAGCATGTTCTGATACATAGCCATACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGAT > NC_000913/1398574‑1398670 | acgtcacacctagtttatgctaactgtcaataacacagcaaacgctatta < 1:1124640‑M2/1‑1 (MQ=255) gtcacacctagtttatgctaactgtcaataacacagcaaacgctatta > 1:2543995‑M2/48‑48 (MQ=255) cacacctagtttatgctaactgtcaataacacagcaaacgctattACAgg > 1:243539‑M2/46‑50 (MQ=255) tagtttatgctaactgtcaataacacagcaaacgctattACAGGGTCTcc > 1:1341903‑M2/40‑50 (MQ=255) agtttatgctaactgtcaataacacagcaaacgctattACAGGGTCTCCt > 1:456516‑M2/39‑50 (MQ=255) ttatgctaactgtcaataacacagcaaacgctattACAGGGTCTCCTTa > 1:2322715‑M2/36‑49 (MQ=255) taactgtcaataacacagcaaacgctattACAGGGTCTCCTTACaacaac > 1:332705‑M2/30‑50 (MQ=255) taactgtcaataacacagcaaacgctattACAGGGTCTCCTTACaacaac > 1:53145‑M2/30‑50 (MQ=255) tgtcaataacacagcaaacgctattACAGGGTCTCCTTACAACAACTGt > 1:2395578‑M2/26‑49 (MQ=255) aataacacagcaaacgctattACAGGGTCTCCTTACAACAACTGTCAACg > 1:2292467‑M2/22‑50 (MQ=255) aataacacagcaaacgctattACAGGGTCTCCTTACAACAACTGTCAACg > 1:1465471‑M2/22‑50 (MQ=255) ataacacagcaaacgctattACAGGGTCTCCTTACAACAACTGTCAACGc < 1:1711378‑M2/30‑1 (MQ=255) aacacagcaaacgctattACAGGGTCTCCTTACAACAACTGTCAACGCAg > 1:2008434‑M2/19‑50 (MQ=255) acacagcaaacgctattACAGGGTCTCCTTACAACAACTGTCAACGCAGt > 1:2286214‑M2/18‑50 (MQ=255) acagcaaacgctattACAGGGTCTCCTTACAACAACTGTCAACGCAGttt > 1:1062839‑M2/16‑50 (MQ=255) acagcaaacgctattACAGGGTCTCCTTACAACAACTGTCAACGCAGttt < 1:496020‑M2/35‑1 (MQ=255) agcaaacgctattACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGt < 1:1905942‑M2/37‑1 (MQ=255) cgctattACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTaa < 1:2183980‑M2/43‑1 (MQ=255) gctattACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTaaa < 1:2410832‑M2/44‑1 (MQ=255) ctattACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTaa > 1:871992‑M2/6‑48 (MQ=255) attACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTaa > 1:36486‑M2/4‑46 (MQ=255) ttACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGAt < 1:1352402‑M2/48‑1 (MQ=255) | CGTCCTGGTTAGGATCGATAACAACGAGCATGTTCTGATACATAGCCATACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGAT > NC_000913/1398574‑1398670 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |