| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,962,566 | Δ16,764 bp | flhE–insA‑5 | 17 genes flhE, flhA, flhB, cheZ, cheY, cheB, cheR, tap, tar, cheW, cheA, motB, motA, flhC, flhD, insB‑5, insA‑5 |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1962566 | 1979329 | 16764 | 44 [0] | [0] 44 | flhE–insA‑5 | flhE,flhA,flhB,cheZ,cheY,cheB,cheR,tap,tar,cheW,cheA,motB,motA,flhC,flhD,insB‑5,insA‑5 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1962565 | 0 (0.000) | 44 (1.480) | 32/96 | 0.0 | 100% | intergenic (+105/+15) | yecT/flhE | protein YecT/flagellar protein |
| ? | NC_000913 | 1979330 = | 0 (0.000) | intergenic (‑115/‑423) | insA‑5/uspC | IS1 protein InsA/universal stress protein C | |||||
GACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1962518‑1962565‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATG > NC_000913/1979330‑1979377 GACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCG < 1:1186659/50‑1 ATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTA < 1:1118940/50‑1 TCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTAC < 1:463101/50‑1 TCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTAC < 1:2613259/50‑1 TCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTAC < 1:2593871/50‑1 TCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTAC < 1:1723816/50‑1 CGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACG > 1:891163/1‑50 CCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAG < 1:1023175/50‑1 CCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAG < 1:507581/50‑1 CTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGC < 1:2276801/50‑1 CTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAG > 1:1961909/1‑49 TTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAG > 1:565541/1‑49 TTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAG > 1:670047/1‑49 TCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGC < 1:2505840/49‑1 CACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCA > 1:220484/1‑49 ACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAA < 1:827444/49‑1 TGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAA > 1:466251/1‑50 AGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATG < 1:2222362/50‑1 AGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAAT < 1:2452560/49‑1 GTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATG > 1:399422/1‑49 TTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGA > 1:1437363/1‑49 TTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGA > 1:627496/1‑49 TTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACA < 1:948295/50‑1 AAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAG > 1:1533281/1‑49 AACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGA < 1:686332/50‑1 AACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGG > 1:2679344/1‑49 AACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGG > 1:432989/1‑49 AACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGG > 1:41809/1‑49 ACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAA < 1:2153649/50‑1 CATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAAT < 1:1527865/50‑1 ACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAAT > 1:1420286/1‑50 ACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAAT > 1:2115614/1‑50 CTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAAT < 1:73133/49‑1 CTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAAT < 1:106/49‑1 CGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCG > 1:2189809/1‑49 CGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCG > 1:120991/1‑49 GCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAA < 1:2519725/50‑1 GCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGA > 1:2391689/1‑49 GCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCG < 1:496061/48‑1 AGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATG < 1:354665/50‑1 AGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATG < 1:164682/50‑1 CGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGG < 1:314876/50‑1 GTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATG < 1:67185/50‑1 GTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATG > 1:244776/1‑50 GACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1962518‑1962565‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATG > NC_000913/1979330‑1979377 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |