| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,962,566 | Δ16,764 bp | flhE–insA‑5 | 17 genes flhE, flhA, flhB, cheZ, cheY, cheB, cheR, tap, tar, cheW, cheA, motB, motA, flhC, flhD, insB‑5, insA‑5 |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1962566 | 1979329 | 16764 | 44 [0] | [0] 44 | flhE–insA‑5 | flhE,flhA,flhB,cheZ,cheY,cheB,cheR,tap,tar,cheW,cheA,motB,motA,flhC,flhD,insB‑5,insA‑5 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1962565 | 0 (0.000) | 44 (1.480) | 32/96 | 0.0 | 100% | intergenic (+105/+15) | yecT/flhE | protein YecT/flagellar protein |
| ? | NC_000913 | 1979330 = | 0 (0.000) | intergenic (‑115/‑423) | insA‑5/uspC | IS1 protein InsA/universal stress protein C | |||||
AAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATG > NC_000913/1979282‑1979377 | gacatcgagcctttttcactgagttattaaacatactcgcgagcgcgtcg < 1:1186659‑M2/2‑1 (MQ=255) atcgagcctttttcactgagttattaaacatactcgcgagcgcgtcgcta < 1:1118940‑M2/5‑1 (MQ=255) tcgagcctttttcactgagttattaaacatactcgcgagcgcgtcgctac < 1:463101‑M2/6‑1 (MQ=255) tcgagcctttttcactgagttattaaacatactcgcgagcgcgtcgctac < 1:2613259‑M2/6‑1 (MQ=255) tcgagcctttttcactgagttattaaacatactcgcgagcgcgtcgctac < 1:2593871‑M2/6‑1 (MQ=255) tcgagcctttttcactgagttattaaacatactcgcgagcgcgtcgctac < 1:1723816‑M2/6‑1 (MQ=255) cgagcctttttcactgagttattaaacatactcgcgagcgcgtcgctacg > 1:891163‑M2/44‑50 (MQ=255) cctttttcactgagttattaaacatactcgcgagcgcgtCGCTACGCTag < 1:1023175‑M2/11‑1 (MQ=255) cctttttcactgagttattaaacatactcgcgagcgcgtCGCTACGCTag < 1:507581‑M2/11‑1 (MQ=255) ctttttcactgagttattaaacatactcgcgagcgcgtCGCTACGCTagc < 1:2276801‑M2/12‑1 (MQ=255) ctttttcactgagttattaaacatactcgcgagcgcgtCGCTACGCTag > 1:1961909‑M2/39‑49 (MQ=255) ttcactgagttattaaacatactcgcgagcgcgtCGCTACGCTagcaag > 1:565541‑M2/35‑49 (MQ=255) ttcactgagttattaaacatactcgcgagcgcgtCGCTACGCTagcaag > 1:670047‑M2/35‑49 (MQ=255) tcactgagttattaaacatactcgcgagcgcgtCGCTACGCTagcaagc < 1:2505840‑M2/16‑1 (MQ=255) cactgagttattaaacatactcgcgagcgcgtCGCTACGCTagcaagca > 1:220484‑M2/33‑49 (MQ=255) actgagttattaaacatactcgcgagcgcgtCGCTACGCTAgcaagcaa < 1:827444‑M2/18‑1 (MQ=255) tgagttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCaaaaa > 1:466251‑M2/30‑50 (MQ=255) agttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAAt < 1:2452560‑M2/22‑1 (MQ=255) agttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATg < 1:2222362‑M2/23‑1 (MQ=255) gttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATg > 1:399422‑M2/27‑49 (MQ=255) ttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGa > 1:1437363‑M2/26‑49 (MQ=255) ttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGa > 1:627496‑M2/26‑49 (MQ=255) ttaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACa < 1:948295‑M2/28‑1 (MQ=255) aaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAg > 1:1533281‑M2/21‑49 (MQ=255) aacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAgg > 1:41809‑M2/20‑49 (MQ=255) aacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAgg > 1:2679344‑M2/20‑49 (MQ=255) aacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAgg > 1:432989‑M2/20‑49 (MQ=255) aacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGa < 1:686332‑M2/31‑1 (MQ=255) acatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaa < 1:2153649‑M2/32‑1 (MQ=255) catactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaat < 1:1527865‑M2/33‑1 (MQ=255) actcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaataat > 1:1420286‑M2/15‑50 (MQ=255) actcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaataat > 1:2115614‑M2/15‑50 (MQ=255) ctcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaataat < 1:73133‑M2/36‑1 (MQ=255) ctcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaataat < 1:106‑M2/36‑1 (MQ=255) cgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCg > 1:2189809‑M2/12‑49 (MQ=255) cgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCg > 1:120991‑M2/12‑49 (MQ=255) gcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCg < 1:496061‑M2/38‑1 (MQ=255) gcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGaa < 1:2519725‑M2/40‑1 (MQ=255) gcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGa > 1:2391689‑M2/11‑49 (MQ=255) agcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATg < 1:354665‑M2/43‑1 (MQ=255) agcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATg < 1:164682‑M2/43‑1 (MQ=255) cgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATggg < 1:314876‑M2/45‑1 (MQ=255) gtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATg < 1:67185‑M2/48‑1 (MQ=255) gtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATg > 1:244776‑M2/3‑50 (MQ=255) | AAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATG > NC_000913/1979282‑1979377 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |