Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,997,112 Δ26,567 bp [tcyN]–[fliR] 32 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1997112 2023678 26567 29 [0] [0] 27 [tcyN]–[fliR] [tcyN],tcyL,dcyD,tcyJ,fliZ,fliA,fliC,fliD,fliS,fliT,amyA,yedD,yedE,yedF,yedK,yedL,yedN,intG,fliE,fliF,fliG,fliH,fliI,fliJ,fliK,fliL,fliM,fliN,fliO,fliP,fliQ,[fliR]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 19971110 (0.000)27 (0.890) 25/98 0.1 100% coding (704/753 nt) tcyN cystine ABC transporter ATP binding subunit
?NC_000913 2023679 = 0 (0.000)intergenic (+1/‑289) fliR/rcsA flagellar biosynthesis protein FliR/DNA‑binding transcriptional activator RcsA

TTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1997065‑1997111
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAAT  >  NC_000913/2023679‑2023725
                                                                                              
TTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTT                                               <  1:1887690/49‑1
   CAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGT                                           <  1:1548074/50‑1
       AGAAACTTCTCGAGGAACTGGCGGGTGCGAGGGTGCTCGGTTCCGTA                                          >  1:2488490/1‑47
       AGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACG                                       <  1:1776982/50‑1
          AACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTT                                    <  1:373947/50‑1
          AACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCCTAACGTT                                     >  1:571883/1‑49
              TCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGGTCCGTAACGTTTATCA                                >  1:1647219/1‑50
                   AGGAACTGGCGGGTGCGGGGCTGCTCCGTTCCGTAACGTTTATCATGTTA                           >  1:183935/1‑50
                    GGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTAT                          <  1:2404503/50‑1
                     GAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATC                         <  1:878902/50‑1
                      AACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCC                        <  1:2280440/50‑1
                       ACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCT                       <  1:716022/50‑1
                        CTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTA                      <  1:572172/50‑1
                            CGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGA                  <  1:814804/50‑1
                            CGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGA                  >  1:1510223/1‑50
                              GGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGAT                 >  1:512741/1‑49
                                TGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTAT              <  1:2690129/50‑1
                                    AGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGA          <  1:1259788/50‑1
                                    AGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCG           >  1:1532812/1‑49
                                      GCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAA        <  1:550636/50‑1
                                      GCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAA         >  1:1493687/1‑49
                                       CTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAA       <  1:1832385/50‑1
                                       CTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAA       <  1:226919/50‑1
                                       CTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAA        >  1:2666333/1‑49
                                       CTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAA        <  1:2235784/49‑1
                                          CTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATA    <  1:2674844/50‑1
                                             GGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAAT  <  1:589993/49‑1
                                                                                              
TTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1997065‑1997111
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAAT  >  NC_000913/2023679‑2023725

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.