| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,997,112 | Δ26,567 bp | [tcyN]–[fliR] | 32 genes [tcyN], tcyL, dcyD, tcyJ, fliZ, fliA, fliC, fliD, fliS, fliT, amyA, yedD, yedE, yedF, yedK, yedL, yedN, intG, fliE, fliF, fliG, fliH, fliI, fliJ, fliK, fliL, fliM, fliN, fliO, fliP, fliQ, [fliR] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1997112 | 2023678 | 26567 | 29 [0] | [0] 27 | [tcyN]–[fliR] | [tcyN],tcyL,dcyD,tcyJ,fliZ,fliA,fliC,fliD,fliS,fliT,amyA,yedD,yedE,yedF,yedK,yedL,yedN,intG,fliE,fliF,fliG,fliH,fliI,fliJ,fliK,fliL,fliM,fliN,fliO,fliP,fliQ,[fliR] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1997111 | 0 (0.000) | 27 (0.890) | 25/98 | 0.1 | 100% | coding (704/753 nt) | tcyN | cystine ABC transporter ATP binding subunit |
| ? | NC_000913 | 2023679 = | 0 (0.000) | intergenic (+1/‑289) | fliR/rcsA | flagellar biosynthesis protein FliR/DNA‑binding transcriptional activator RcsA | |||||
TTTTTAATTTGCTGGCTGATATTATTAGTGAATTGCCATTAATATAATTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAAT > NC_000913/2023632‑2023725 | ttgcagcagaaacttctcgaggaactggcgggtgcgaggctgctcggtt < 1:1887690‑M2/2‑1 (MQ=255) cagcagaaacttctcgaggaactggcgggtgcgaggctgctcggTTCCGt < 1:1548074‑M2/6‑1 (MQ=255) agaaacttctcgaggaactggcgggtgcgagggtgctcggTTCCGTa > 1:2488490‑M2/41‑47 (MQ=255) agaaacttctcgaggaactggcgggtgcgaggctgctcggTTCCGTAACg < 1:1776982‑M2/10‑1 (MQ=255) aacttctcgaggaactggcgggtgcgaggctgctcggTTCCGTAACGttt < 1:373947‑M2/13‑1 (MQ=255) aacttctcgaggaactggcgggtgcgaggctgctcggTTCCCTAACGtt > 1:571883‑M2/38‑49 (MQ=255) tctcgaggaactggcgggtgcgaggctgctcggGTCCGTAACGTTTATCa > 1:1647219‑M2/34‑50 (MQ=255) aggaactggcgggtgcggggctgctccgTTCCGTAACGTTTATCATGTTa > 1:183935‑M2/29‑50 (MQ=255) ggaactggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTAt < 1:2404503‑M2/23‑1 (MQ=255) gaactggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATc < 1:878902‑M2/24‑1 (MQ=255) aactggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATcc < 1:2280440‑M2/25‑1 (MQ=255) actggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCt < 1:716022‑M2/26‑1 (MQ=255) ctggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTa < 1:572172‑M2/27‑1 (MQ=255) cgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGa < 1:814804‑M2/31‑1 (MQ=255) cgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGa > 1:1510223‑M2/20‑50 (MQ=255) ggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGAt > 1:512741‑M2/18‑49 (MQ=255) tgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTAt < 1:2690129‑M2/35‑1 (MQ=255) aggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCg > 1:1532812‑M2/12‑49 (MQ=255) aggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGa < 1:1259788‑M2/39‑1 (MQ=255) gctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGaaa < 1:550636‑M2/41‑1 (MQ=255) gctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGaa > 1:1493687‑M2/10‑49 (MQ=255) ctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGaaaa < 1:1832385‑M2/42‑1 (MQ=255) ctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGaaaa < 1:226919‑M2/42‑1 (MQ=255) ctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGaaa > 1:2666333‑M2/9‑49 (MQ=255) ctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGaaa < 1:2235784‑M2/41‑1 (MQ=255) ctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAaata < 1:2674844‑M2/45‑1 (MQ=255) ggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAaataat < 1:589993‑M2/47‑1 (MQ=255) | TTTTTAATTTGCTGGCTGATATTATTAGTGAATTGCCATTAATATAATTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAAT > NC_000913/2023632‑2023725 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |