| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,110,680 | 25702 bp→GA | [yghD]–pitB | 20 genes [yghD], yghE, yghF, yghG, pppA, yghJ, glcA, glcB, glcG, glcF, glcE, glcD, glcC, yghO, insH‑9, yghQ, yghR, yghS, yghT, pitB |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3110680 | 3136381 | 25702 | 26 [0] | [0] 27 | [yghD]–pitB | [yghD],yghE,yghF,yghG,pppA,yghJ,glcA,glcB,glcG,glcF,glcE,glcD,glcC,yghO,insH‑9,yghQ,yghR,yghS,yghT,pitB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3110679 | 0 (0.000) | 26 (0.890) +GA |
21/94 | 0.1 | 100% | coding (448/537 nt) | yghD | putative type II secretion system M‑type protein |
| ? | NC_000913 | 3136382 = | 0 (0.000) | intergenic (‑11/+281) | pitB/gss | metal phosphate:H(+) symporter PitB/fused glutathionylspermidine amidase/glutathionylspermidine synthetase | |||||
GCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3110634‑3110679‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGG > NC_000913/3136382‑3136429 || GCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAAC < 1:440080/50‑1GCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAAC < 1:2484749/50‑1 TTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGC > 1:2220407/1‑50 CTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCA > 1:1080972/1‑50 CAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATT > 1:772916/1‑50 CAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATT > 1:1481762/1‑50 GCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTT < 1:156646/50‑1 CAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTT > 1:1151905/1‑49 ATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAA > 1:950152/1‑50 CAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACG > 1:853372/1‑50 ATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGA > 1:1092894/1‑50 CACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTAT > 1:279934/1‑50 CCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAG < 1:1590515/50‑1 CGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGT < 1:1432582/50‑1 GCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTG < 1:1400651/50‑1 CAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGA < 1:1631806/50‑1 CAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGA > 1:2044654/1‑50 CAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGA < 1:669975/50‑1 AGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGAC < 1:2661872/50‑1 AGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGAC < 1:1329886/50‑1 GCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTT < 1:738033/50‑1 GCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTT < 1:1250581/50‑1 CATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTA < 1:1577697/50‑1 CATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTT > 1:1879001/1‑49 ATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAA > 1:1123080/1‑50 AGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACG > 1:1898602/1‑50 GAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGG > 1:508820/1‑50 || GCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3110634‑3110679‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGG > NC_000913/3136382‑3136429 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |