| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,110,680 | 25702 bp→GA | [yghD]–pitB | 20 genes [yghD], yghE, yghF, yghG, pppA, yghJ, glcA, glcB, glcG, glcF, glcE, glcD, glcC, yghO, insH‑9, yghQ, yghR, yghS, yghT, pitB |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3110680 | 3136381 | 25702 | 26 [0] | [0] 27 | [yghD]–pitB | [yghD],yghE,yghF,yghG,pppA,yghJ,glcA,glcB,glcG,glcF,glcE,glcD,glcC,yghO,insH‑9,yghQ,yghR,yghS,yghT,pitB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3110679 | 0 (0.000) | 26 (0.890) +GA |
21/94 | 0.1 | 100% | coding (448/537 nt) | yghD | putative type II secretion system M‑type protein |
| ? | NC_000913 | 3136382 = | 0 (0.000) | intergenic (‑11/+281) | pitB/gss | metal phosphate:H(+) symporter PitB/fused glutathionylspermidine amidase/glutathionylspermidine synthetase | |||||
GCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTTTAACCATTTCAGCAGGTCATTAAACACCACA > NC_000913/3110634‑3110728 | gCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAgaac < 1:440080‑M1/50‑5 (MQ=255)gCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAgaac < 1:2484749‑M1/50‑5 (MQ=255) ttCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgc > 1:2220407‑M1/1‑44 (MQ=255) ctcAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgcca > 1:1080972‑M1/1‑42 (MQ=255) cagcagCACTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccatt > 1:772916‑M1/1‑40 (MQ=255) cagcagCACTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccatt > 1:1481762‑M1/1‑40 (MQ=255) gcagcaCTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccatttt < 1:156646‑M1/50‑13 (MQ=255) cagcaCTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccatttt > 1:1151905‑M1/1‑37 (MQ=255) aTCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaatttacgaa > 1:950152‑M1/1‑27 (MQ=255) cAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaatttacgaacg > 1:853372‑M1/1‑25 (MQ=255) aTTTGTGTCACCCGCAGCGCATAgaacgccattttgaatttacgaacgga > 1:1092894‑M1/1‑23 (MQ=255) cACCCGCAGCGCATAgaacgccattttgaatttacgaacggacgcattat > 1:279934‑M1/1‑15 (MQ=255) ccGCAGCGCATAgaacgccattttgaatttacgaacggacgcattatcag < 1:1590515‑M1/50‑39 (MQ=255) cGCAGCGCATAgaacgccattttgaatttacgaacggacgcattatcagt < 1:1432582‑M1/50‑40 (MQ=255) gCAGCGCATAgaacgccattttgaatttacgaacggacgcattatcagtg < 1:1400651‑M1/50‑41 (MQ=255) cAGCGCATAgaacgccattttgaatttacgaacggacgcattatcagtga < 1:1631806‑M1/50‑42 (MQ=255) cAGCGCATAgaacgccattttgaatttacgaacggacgcattatcagtga > 1:2044654‑M1/1‑9 (MQ=255) cAGCGCATAgaacgccattttgaatttacgaacggacgcattatcagtga < 1:669975‑M1/50‑42 (MQ=255) aGCGCATAgaacgccattttgaatttacgaacggacgcattatcagtgac < 1:2661872‑M1/50‑43 (MQ=255) aGCGCATAgaacgccattttgaatttacgaacggacgcattatcagtgac < 1:1329886‑M1/50‑43 (MQ=255) gcATAgaacgccattttgaatttacgaacggacgcattatcagtgacttt < 1:738033‑M1/50‑46 (MQ=255) gcATAgaacgccattttgaatttacgaacggacgcattatcagtgacttt < 1:1250581‑M1/50‑46 (MQ=255) cATAgaacgccattttgaatttacgaacggacgcattatcagtgacttta < 1:1577697‑M1/50‑47 (MQ=255) cATAgaacgccattttgaatttacgaacggacgcattatcagtgacttt > 1:1879001‑M1/1‑4 (MQ=255) aTAgaacgccattttgaatttacgaacggacgcattatcagtgactttaa > 1:1123080‑M1/1‑3 (MQ=255) agaacgccattttgaatttacgaacggacgcattatcagtgactttaacg > 1:1898602‑M1/1‑1 (MQ=255) | GCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTTTAACCATTTCAGCAGGTCATTAAACACCACA > NC_000913/3110634‑3110728 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |