Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
MC JC | NC_000913 | 765,208 | Δ5,405 bp | [mngR]–mngB | [mngR], mngA, mngB |
Missing coverage evidence... | ||||||||||
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seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NC_000913 | 765208 | 770612 | 5405 | 38 [0] | [0] 38 | [mngR]–mngB | [mngR],mngA,mngB |
New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 765207 | 0 (0.000) | 38 (1.280) | 25/96 | 0.0 | 100% | coding (669/723 nt) | mngR | DNA‑binding transcriptional repressor MngR |
? | NC_000913 | 770613 = | 0 (0.000) | intergenic (+2/‑845) | mngB/cydA | alpha‑mannosidase/cytochrome bd‑I ubiquinol oxidase subunit I |
CGATGATTTTCGCTGCGCTATCAGGGTAAATTTATAGTCATCGGTATTAAAAGCGTTGCGGCTATATTCAAACACCCGACCATCAACTAAATATCC > NC_000913/765159‑765254 | cgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAta < 1:311374‑M1/50‑3 (MQ=255) gatgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag > 1:167373‑M1/1‑47 (MQ=255) atgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagc < 1:2140299‑M1/50‑5 (MQ=255) atTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaat > 1:1844422‑M1/1‑43 (MQ=255) ttttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatc < 1:1263530‑M1/50‑9 (MQ=255) ttttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatc < 1:410685‑M1/50‑9 (MQ=255) ttttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaat > 1:1771179‑M1/1‑42 (MQ=255) tttCGCTGCGCTATCCGGGTAAA‑TTATAGTCATCGGTATTAtagcaatc > 1:2340897‑M1/1‑41 (MQ=255) tttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatc > 1:578162‑M1/1‑41 (MQ=255) cGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaac > 1:963074‑M1/1‑38 (MQ=255) cGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaac > 1:2659194‑M1/1‑38 (MQ=255) cGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaac > 1:1706871‑M1/1‑38 (MQ=255) cGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaa < 1:678574‑M1/49‑12 (MQ=255) gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaacc < 1:1651447‑M1/50‑14 (MQ=255) gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaacc < 1:2512072‑M1/50‑14 (MQ=255) gcgcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccg > 1:1603340‑M1/1‑34 (MQ=255) gcgcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccg > 1:1415707‑M1/1‑34 (MQ=255) cgcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaag < 1:1738243‑M1/50‑18 (MQ=255) cgcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaag > 1:349574‑M1/1‑33 (MQ=255) cgcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaag > 1:1394880‑M1/1‑33 (MQ=255) cAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccaca > 1:248087‑M1/1‑27 (MQ=255) cAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccaca > 1:2629528‑M1/1‑27 (MQ=255) aGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacata > 1:1987153‑M1/1‑26 (MQ=255) aGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacata > 1:1045023‑M1/1‑26 (MQ=255) gggTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatat > 1:2382705‑M1/1‑25 (MQ=255) gggTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatat > 1:232973‑M1/1‑25 (MQ=255) ggTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatg > 1:599784‑M1/1‑24 (MQ=255) gTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgc > 1:1242367‑M1/1‑23 (MQ=255) aattatAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgc < 1:240991‑M1/47‑30 (MQ=255) attaTAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcgg > 1:2429232‑M1/2‑19 (MQ=255) tataGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggc > 1:1661357‑M1/1‑17 (MQ=255) ataGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggcc < 1:1327627‑M1/49‑34 (MQ=255) taGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggc > 1:799354‑M1/1‑15 (MQ=255) aGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggc > 1:1470190‑M1/1‑14 (MQ=255) aGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggc > 1:140194‑M1/1‑14 (MQ=255) cATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagattg > 1:179561‑M1/1‑11 (MQ=255) gTATTAtagcaatcaaaccgaagccacatatgcgcggccagattgttgac < 1:1948985‑M1/50‑45 (MQ=255) ttatagcaatcaaaccgaagccacatatgcgcggccagattgttgacaaa < 1:623503‑M1/50‑48 (MQ=255) | CGATGATTTTCGCTGCGCTATCAGGGTAAATTTATAGTCATCGGTATTAAAAGCGTTGCGGCTATATTCAAACACCCGACCATCAACTAAATATCC > NC_000913/765159‑765254 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |