| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 765,208 | Δ5,405 bp | [mngR]–mngB | [mngR], mngA, mngB | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 765208 | 770612 | 5405 | 38 [0] | [0] 38 | [mngR]–mngB | [mngR],mngA,mngB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 765207 | 0 (0.000) | 38 (1.280) | 25/96 | 0.0 | 100% | coding (669/723 nt) | mngR | DNA‑binding transcriptional repressor MngR |
| ? | NC_000913 | 770613 = | 0 (0.000) | intergenic (+2/‑845) | mngB/cydA | alpha‑mannosidase/cytochrome bd‑I ubiquinol oxidase subunit I | |||||
CTTTTTTACCCGGCCAGTCACGGACGTTCAGTTACCGGCTTGCCTGAATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAA > NC_000913/770565‑770659 | cgatgattttcgctgcgctatcagggtaaattatagtcatcggtattata < 1:311374‑M2/2‑1 (MQ=255) gatgattttcgctgcgctatcagggtaaattatagtcatcggtattaTAg > 1:167373‑M2/48‑50 (MQ=255) atgattttcgctgcgctatcagggtaaattatagtcatcggtattaTAGc < 1:2140299‑M2/4‑1 (MQ=255) attttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCAAt > 1:1844422‑M2/44‑50 (MQ=255) ttttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCAAt > 1:1771179‑M2/43‑49 (MQ=255) ttttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCAATc < 1:1263530‑M2/8‑1 (MQ=255) ttttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCAATc < 1:410685‑M2/8‑1 (MQ=255) tttcgctgcgctatccgggtaaattatagtcatcggtattaTAGCAATc > 1:2340897‑M2/42‑49 (MQ=255) tttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCAATc > 1:578162‑M2/42‑49 (MQ=255) cgctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCaaa < 1:678574‑M2/11‑1 (MQ=255) cgctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCAAAc > 1:963074‑M2/39‑50 (MQ=255) cgctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCAAAc > 1:2659194‑M2/39‑50 (MQ=255) cgctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCAAAc > 1:1706871‑M2/39‑50 (MQ=255) gctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCAAAcc < 1:1651447‑M2/13‑1 (MQ=255) gctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCAAAcc < 1:2512072‑M2/13‑1 (MQ=255) gcgctatcagggtaaattatagtcatcggtattaTAGCAATCAAACCg > 1:1415707‑M2/35‑48 (MQ=255) gcgctatcagggtaaattatagtcatcggtattaTAGCAATCAAACCg > 1:1603340‑M2/35‑48 (MQ=255) cgctatcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAg < 1:1738243‑M2/17‑1 (MQ=255) cgctatcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAg > 1:1394880‑M2/34‑50 (MQ=255) cgctatcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAg > 1:349574‑M2/34‑50 (MQ=255) cagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCcaca > 1:248087‑M2/28‑49 (MQ=255) cagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCcaca > 1:2629528‑M2/28‑49 (MQ=255) agggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCCACata > 1:1987153‑M2/27‑50 (MQ=255) agggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCCACata > 1:1045023‑M2/27‑50 (MQ=255) gggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCCACatat > 1:2382705‑M2/26‑50 (MQ=255) gggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCCACatat > 1:232973‑M2/26‑50 (MQ=255) ggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATg > 1:599784‑M2/25‑50 (MQ=255) gtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATgc > 1:1242367‑M2/24‑50 (MQ=255) aattatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATgcgc < 1:240991‑M2/29‑1 (MQ=255) attatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCgg > 1:2429232‑M2/20‑50 (MQ=255) tatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGc > 1:1661357‑M2/18‑49 (MQ=255) atagtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGcc < 1:1327627‑M2/33‑1 (MQ=255) tagtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGc > 1:799354‑M2/16‑47 (MQ=255) agtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGc > 1:1470190‑M2/15‑46 (MQ=255) agtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGc > 1:140194‑M2/15‑46 (MQ=255) catcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAttg > 1:179561‑M2/12‑50 (MQ=255) gtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGAc < 1:1948985‑M2/44‑1 (MQ=255) ttaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACaaa < 1:623503‑M2/47‑1 (MQ=255) | CTTTTTTACCCGGCCAGTCACGGACGTTCAGTTACCGGCTTGCCTGAATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAA > NC_000913/770565‑770659 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |